Solyc10g080220.2.1


Description : Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana (sp|q9fnd7|pp410_arath : 402.0)


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0015480 (LandPlants) Phylogenetic Tree(s): OG_02_0015480_tree ,
OG_03_0015215 (SeedPlants) Phylogenetic Tree(s): OG_03_0015215_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g080220.2.1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT2G02750 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G13880 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G16470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G13230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G47460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01000420001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01003804001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.09 Archaeplastida
GSVIVT01003957001 No alias Pentatricopeptide repeat-containing protein At5g65570... 0.04 Archaeplastida
GSVIVT01004939001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
GSVIVT01007645001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.09 Archaeplastida
GSVIVT01007811001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.04 Archaeplastida
GSVIVT01007937001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.08 Archaeplastida
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.06 Archaeplastida
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.04 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.06 Archaeplastida
GSVIVT01010654001 No alias Pentatricopeptide repeat-containing protein At4g38010... 0.07 Archaeplastida
GSVIVT01011501001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.04 Archaeplastida
GSVIVT01011735001 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.06 Archaeplastida
GSVIVT01012206001 No alias Putative pentatricopeptide repeat-containing protein... 0.1 Archaeplastida
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.08 Archaeplastida
GSVIVT01015521001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.04 Archaeplastida
GSVIVT01016860001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01016874001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01017378001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
GSVIVT01018018001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.06 Archaeplastida
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
GSVIVT01018877001 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.05 Archaeplastida
GSVIVT01020929001 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.04 Archaeplastida
GSVIVT01021246001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.07 Archaeplastida
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
GSVIVT01021789001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01024912001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 Archaeplastida
GSVIVT01025389001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
GSVIVT01026025001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.04 Archaeplastida
GSVIVT01026181001 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.04 Archaeplastida
GSVIVT01027951001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01028022001 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.05 Archaeplastida
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01030248001 No alias Putative pentatricopeptide repeat-containing protein... 0.11 Archaeplastida
GSVIVT01031266001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01033304001 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.1 Archaeplastida
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
GSVIVT01034655001 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.05 Archaeplastida
GSVIVT01036010001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01036943001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
GSVIVT01036975001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
GSVIVT01037562001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
Gb_00194 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_03137 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_03354 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_04430 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_04460 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_04533 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_05123 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_05649 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_06693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_09146 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_09407 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Gb_11219 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_11220 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_11545 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_12556 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
Gb_12585 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_13222 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_14956 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_15874 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Gb_16032 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
Gb_16328 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_17076 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_18745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_20749 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_20774 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_21055 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_21435 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_22288 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_22805 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_26571 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_27057 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_29873 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_30523 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_30661 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_31374 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_32227 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_33697 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_33959 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_34816 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_35645 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_36081 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Gb_37509 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_37820 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
LOC_Os01g01115.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os01g08120.1 No alias RNA editing factor (OTP81) 0.04 Archaeplastida
LOC_Os03g56850.1 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.08 Archaeplastida
LOC_Os03g63510.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os03g64370.1 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.05 Archaeplastida
LOC_Os04g57940.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
LOC_Os05g05490.1 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.04 Archaeplastida
LOC_Os05g30710.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
LOC_Os06g12510.1 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.09 Archaeplastida
LOC_Os07g44299.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.05 Archaeplastida
LOC_Os09g24680.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.04 Archaeplastida
LOC_Os10g30590.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.04 Archaeplastida
LOC_Os11g10740.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
LOC_Os12g06070.1 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.06 Archaeplastida
LOC_Os12g13110.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.03 Archaeplastida
LOC_Os12g30620.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
MA_25729g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
MA_285318g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_5481g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_73205g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Zm00001e002505_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e003284_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.04 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.06 Archaeplastida
Zm00001e011923_P001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Zm00001e030887_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e031396_P001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Zm00001e031660_P001 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.04 Archaeplastida
Zm00001e033335_P001 No alias Pentatricopeptide repeat-containing protein At5g61800... 0.04 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
Zm00001e035616_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.07 Archaeplastida
Zm00001e036302_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.04 Archaeplastida
GSVIVT01011887001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 LandPlants
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 SeedPlants
GSVIVT01011887001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 SeedPlants
Gb_41015 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 267 390
IPR002885 Pentatricopeptide_repeat 168 192
IPR002885 Pentatricopeptide_repeat 137 162
IPR002885 Pentatricopeptide_repeat 98 125
IPR002885 Pentatricopeptide_repeat 69 91
IPR002885 Pentatricopeptide_repeat 1 41
No external refs found!