Solyc10g078540.3.1


Description : core component Gar1 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex


Gene families : OG_01_0005231 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005231_tree ,
OG_02_0006383 (LandPlants) Phylogenetic Tree(s): OG_02_0006383_tree ,
OG_03_0009370 (SeedPlants) Phylogenetic Tree(s): OG_03_0009370_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g078540.3.1
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.29 Archaeplastida
Cpa|evm.model.tig00000310.30 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.04 Archaeplastida
Cre13.g567850 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 Archaeplastida
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.36 Archaeplastida
Gb_17575 No alias core component Gar1 of H/ACA small nucleolar... 0.01 Archaeplastida
Gb_24533 No alias core component Gar1 of H/ACA small nucleolar... 0.09 Archaeplastida
LOC_Os11g37080.1 No alias core component Gar1 of H/ACA small nucleolar... 0.15 Archaeplastida
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.04 Archaeplastida
Pp3c25_15020V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.03 Archaeplastida
Pp3c5_28430V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.23 Archaeplastida
Smo266974 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.12 Archaeplastida
Zm00001e011244_P001 No alias core component Gar1 of H/ACA small nucleolar... 0.05 Archaeplastida
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.09 Archaeplastida
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.29 LandPlants
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.33 LandPlants
Gb_17575 No alias core component Gar1 of H/ACA small nucleolar... 0.01 LandPlants
LOC_Os11g37080.1 No alias core component Gar1 of H/ACA small nucleolar... 0.15 LandPlants
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.04 LandPlants
Pp3c25_15020V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.03 LandPlants
Pp3c5_28430V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.2 LandPlants
Smo266974 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.11 LandPlants
Zm00001e011244_P001 No alias core component Gar1 of H/ACA small nucleolar... 0.05 LandPlants
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.09 LandPlants
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.25 SeedPlants
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.29 SeedPlants
Gb_17575 No alias core component Gar1 of H/ACA small nucleolar... 0.01 SeedPlants
LOC_Os11g37080.1 No alias core component Gar1 of H/ACA small nucleolar... 0.15 SeedPlants
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.06 SeedPlants

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 31 137
No external refs found!