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  5. Solyc10g047590.3.1

Solyc10g047590.3.1


Description : Polygalacturonase OS=Gossypium hirsutum (sp|q39786|pglr_goshi : 288.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 233.3)


Gene families : OG_01_0000535 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000535_tree ,
OG_02_0000281 (LandPlants) Phylogenetic Tree(s): OG_02_0000281_tree ,
OG_03_0000124 (SeedPlants) Phylogenetic Tree(s): OG_03_0000124_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g047590.3.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01020794001 No alias Polygalacturonase OS=Nicotiana tabacum 0.06 Archaeplastida
LOC_Os06g35320.1 No alias Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 Archaeplastida
LOC_Os06g40880.1 No alias Probable galacturan 1,4-alpha-galacturonidase SALK6... 0.02 Archaeplastida
Solyc02g069480.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 Archaeplastida
Solyc10g047570.2.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.06 Archaeplastida
Zm00001e030526_P001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.02 Archaeplastida
GSVIVT01020794001 No alias Polygalacturonase OS=Nicotiana tabacum 0.03 LandPlants
Solyc02g069480.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 LandPlants
Solyc07g056290.2.1 No alias pectin lyase 0.07 LandPlants
Solyc10g047570.2.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.06 LandPlants
GSVIVT01020794001 No alias Polygalacturonase OS=Nicotiana tabacum 0.03 SeedPlants
Solyc02g069480.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 SeedPlants
Solyc07g056290.2.1 No alias pectin lyase 0.07 SeedPlants
Solyc10g047570.2.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 54 371
No external refs found!