1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g047000.2.1

Solyc10g047000.2.1


Description : RAE1 scaffold nucleoporin of nuclear pore complex


Gene families : OG_01_0003816 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003816_tree ,
OG_02_0004359 (LandPlants) Phylogenetic Tree(s): OG_02_0004359_tree ,
OG_03_0004418 (SeedPlants) Phylogenetic Tree(s): OG_03_0004418_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g047000.2.1
Cluster HCCA: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
Cre06.g278097 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 Archaeplastida
Gb_30896 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp5g18210.1 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.05 Archaeplastida
Zm00001e039887_P001 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida
Gb_30896 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.02 LandPlants
MA_27152g0010 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.02 LandPlants
Mp5g18210.1 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.05 LandPlants
Zm00001e039887_P001 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.03 LandPlants
Gb_30896 No alias Protein RAE1 OS=Arabidopsis thaliana... 0.02 SeedPlants
Zm00001e039887_P001 No alias RAE1 scaffold nucleoporin of nuclear pore complex 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 236 275
IPR001680 WD40_repeat 114 143
IPR001680 WD40_repeat 72 101
IPR001680 WD40_repeat 29 54
No external refs found!