Solyc10g046970.2.1


Description : transcription factor (TUB)


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0000341 (SeedPlants) Phylogenetic Tree(s): OG_03_0000341_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g046970.2.1
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
AT1G25280 TLP10, AtTLP10 tubby like protein 10 0.04 Archaeplastida
AT1G47270 TLP6, AtTLP6 tubby like protein 6 0.01 Archaeplastida
AT1G53320 AtTLP7, TLP7 tubby like protein 7 0.01 Archaeplastida
Cre12.g520650 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
GSVIVT01010999001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.05 Archaeplastida
GSVIVT01017810001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.08 Archaeplastida
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.06 Archaeplastida
Gb_22686 No alias transcription factor (TUB) 0.04 Archaeplastida
Gb_38151 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os01g48370.1 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os02g47640.1 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os05g36190.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.05 Archaeplastida
Mp6g01640.1 No alias transcription factor (TUB) 0.04 Archaeplastida
Pp3c23_17770V3.1 No alias tubby like protein 3 0.06 Archaeplastida
Pp3c24_19540V3.1 No alias tubby like protein 3 0.01 Archaeplastida
Smo83983 No alias RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
Zm00001e001672_P001 No alias transcription factor (TUB) 0.04 Archaeplastida
Zm00001e019166_P001 No alias transcription factor (TUB) 0.07 Archaeplastida
Zm00001e024284_P002 No alias transcription factor (TUB) 0.11 Archaeplastida
Zm00001e028052_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
AT1G25280 TLP10, AtTLP10 tubby like protein 10 0.04 LandPlants
AT1G47270 TLP6, AtTLP6 tubby like protein 6 0.01 LandPlants
AT1G53320 AtTLP7, TLP7 tubby like protein 7 0.01 LandPlants
AT2G47900 AtTLP3, TLP3 tubby like protein 3 0.02 LandPlants
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.05 LandPlants
GSVIVT01017810001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.06 LandPlants
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
Gb_22686 No alias transcription factor (TUB) 0.04 LandPlants
Gb_38151 No alias transcription factor (TUB) 0.02 LandPlants
LOC_Os01g48370.1 No alias transcription factor (TUB) 0.02 LandPlants
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.03 LandPlants
LOC_Os04g59130.1 No alias transcription factor (TUB) 0.02 LandPlants
LOC_Os05g36190.1 No alias transcription factor (TUB) 0.03 LandPlants
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.03 LandPlants
Mp6g01640.1 No alias transcription factor (TUB) 0.04 LandPlants
Pp3c23_17770V3.1 No alias tubby like protein 3 0.05 LandPlants
Pp3c24_19540V3.1 No alias tubby like protein 3 0.01 LandPlants
Smo83983 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
Zm00001e001672_P001 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.04 LandPlants
Zm00001e024284_P002 No alias transcription factor (TUB) 0.09 LandPlants
Zm00001e028052_P001 No alias transcription factor (TUB) 0.03 LandPlants
AMTR_s00027p00237390 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 SeedPlants
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 SeedPlants
AT1G25280 TLP10, AtTLP10 tubby like protein 10 0.04 SeedPlants
AT1G47270 TLP6, AtTLP6 tubby like protein 6 0.01 SeedPlants
AT2G47900 AtTLP3, TLP3 tubby like protein 3 0.02 SeedPlants
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.05 SeedPlants
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 SeedPlants
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.02 SeedPlants
LOC_Os02g47640.1 No alias transcription factor (TUB) 0.02 SeedPlants
LOC_Os04g59130.1 No alias transcription factor (TUB) 0.02 SeedPlants
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.02 SeedPlants
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.03 SeedPlants
Zm00001e001672_P001 No alias transcription factor (TUB) 0.02 SeedPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.04 SeedPlants
Zm00001e024284_P002 No alias transcription factor (TUB) 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000007 Tubby_C 116 421
IPR001810 F-box_dom 52 105
No external refs found!