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  5. Solyc10g007130.4.1

Solyc10g007130.4.1


Description : RNA polymerase-IV-positioning factor (SHH). transcription factor (SAWADEE)


Gene families : OG_01_0002006 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002006_tree ,
OG_02_0001458 (LandPlants) Phylogenetic Tree(s): OG_02_0001458_tree ,
OG_03_0001429 (SeedPlants) Phylogenetic Tree(s): OG_03_0001429_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g007130.4.1
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00262800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
LOC_Os06g29020.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida
Pp3c20_17640V3.1 No alias sequence-specific DNA binding transcription... 0.02 Archaeplastida
Zm00001e009676_P002 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida
Zm00001e033791_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
AMTR_s00011p00262800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 LandPlants
Gb_03942 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 LandPlants
LOC_Os06g29020.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 LandPlants
Pp3c20_17640V3.1 No alias sequence-specific DNA binding transcription... 0.02 LandPlants
Zm00001e009676_P002 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 LandPlants
Zm00001e033791_P001 No alias no hits & (original description: none) 0.01 LandPlants
Zm00001e033896_P001 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 LandPlants
AMTR_s00011p00262800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 SeedPlants
AT3G18380 No alias sequence-specific DNA binding transcription... 0.02 SeedPlants
Gb_03942 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 SeedPlants
LOC_Os06g29020.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 SeedPlants
MA_10426813g0010 No alias no hits & (original description: none) 0.01 SeedPlants
MA_290667g0010 No alias no hits & (original description: none) 0.01 SeedPlants
Zm00001e009676_P002 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 SeedPlants
Zm00001e033791_P001 No alias no hits & (original description: none) 0.01 SeedPlants
Zm00001e033896_P001 No alias RNA polymerase-IV-positioning factor (SHH).... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032001 SAWADEE_dom 161 288
No external refs found!