AMTR_s00009p00241540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.218

Description : RNA processing.organelle machineries.ribonuclease activities.RNase J endoribonuclease


Gene families : OG_01_0006288 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006288_tree ,
OG_02_0005831 (LandPlants) Phylogenetic Tree(s): OG_02_0005831_tree ,
OG_03_0005199 (SeedPlants) Phylogenetic Tree(s): OG_03_0005199_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00009p00241540
Cluster HCCA: Cluster_186

Target Alias Description ECC score Gene Family Method Actions
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.11 Archaeplastida
GSVIVT01008515001 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.04 Archaeplastida
Gb_26634 No alias exo-/endoribonuclease (RNase J) 0.03 Archaeplastida
Gb_29169 No alias exo-/endoribonuclease (RNase J) 0.04 Archaeplastida
LOC_Os02g33610.1 No alias exo-/endoribonuclease (RNase J) 0.04 Archaeplastida
MA_10429859g0010 No alias exo-/endoribonuclease (RNase J) 0.06 Archaeplastida
Mp3g10830.1 No alias exo-/endoribonuclease (RNase J) 0.07 Archaeplastida
Pp3c20_9790V3.1 No alias RNA-metabolising metallo-beta-lactamase family protein 0.05 Archaeplastida
Solyc03g111260.3.1 No alias exo-/endoribonuclease (RNase J) 0.03 Archaeplastida
Zm00001e013900_P001 No alias exo-/endoribonuclease (RNase J) 0.07 Archaeplastida
Zm00001e025070_P003 No alias exo-/endoribonuclease (RNase J) 0.1 Archaeplastida
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.1 LandPlants
GSVIVT01008515001 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.04 LandPlants
Gb_26634 No alias exo-/endoribonuclease (RNase J) 0.04 LandPlants
Gb_29169 No alias exo-/endoribonuclease (RNase J) 0.04 LandPlants
LOC_Os02g33610.1 No alias exo-/endoribonuclease (RNase J) 0.03 LandPlants
MA_10429859g0010 No alias exo-/endoribonuclease (RNase J) 0.04 LandPlants
Mp3g10830.1 No alias exo-/endoribonuclease (RNase J) 0.07 LandPlants
Pp3c20_9790V3.1 No alias RNA-metabolising metallo-beta-lactamase family protein 0.05 LandPlants
Solyc03g111260.3.1 No alias exo-/endoribonuclease (RNase J) 0.03 LandPlants
Zm00001e013900_P001 No alias exo-/endoribonuclease (RNase J) 0.07 LandPlants
Zm00001e025070_P003 No alias exo-/endoribonuclease (RNase J) 0.09 LandPlants
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.1 SeedPlants
GSVIVT01008515001 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.03 SeedPlants
Gb_26634 No alias exo-/endoribonuclease (RNase J) 0.03 SeedPlants
Gb_29169 No alias exo-/endoribonuclease (RNase J) 0.03 SeedPlants
LOC_Os02g33610.1 No alias exo-/endoribonuclease (RNase J) 0.03 SeedPlants
MA_10429859g0010 No alias exo-/endoribonuclease (RNase J) 0.04 SeedPlants
Solyc03g111260.3.1 No alias exo-/endoribonuclease (RNase J) 0.03 SeedPlants
Zm00001e013900_P001 No alias exo-/endoribonuclease (RNase J) 0.07 SeedPlants
Zm00001e025070_P003 No alias exo-/endoribonuclease (RNase J) 0.1 SeedPlants

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011108 RMMBL 436 467
IPR001279 Metallo-B-lactamas 90 250
No external refs found!