Solyc10g006530.4.1


Description : Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana (sp|q9sgh4|pnsl3_arath : 82.4)


Gene families : OG_01_0001933 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001933_tree ,
OG_02_0009073 (LandPlants) Phylogenetic Tree(s): OG_02_0009073_tree ,
OG_03_0006241 (SeedPlants) Phylogenetic Tree(s): OG_03_0006241_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g006530.4.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00134700 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00098p00154060 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.05 Archaeplastida
AMTR_s00098p00157610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 Archaeplastida
AT2G01918 PQL3 PsbQ-like 3 0.06 Archaeplastida
AT3G01440 PQL1, PQL2 PsbQ-like 1 0.08 Archaeplastida
AT4G21280 PSBQA, PSBQ-1, PSBQ photosystem II subunit QA 0.11 Archaeplastida
Cre08.g372450 No alias Oxygen-evolving enhancer protein 3, chloroplastic... 0.02 Archaeplastida
GSVIVT01002809001 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.06 Archaeplastida
GSVIVT01014586001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.1 Archaeplastida
LOC_Os04g44200.1 No alias PsbQ-like protein 3, chloroplastic OS=Arabidopsis... 0.07 Archaeplastida
LOC_Os07g01480.1 No alias component PnsL3/PQL2 of NDH lumen subcomplex L 0.08 Archaeplastida
LOC_Os07g36080.1 No alias component PsbQ of PS-II oxygen-evolving center 0.03 Archaeplastida
Mp4g07510.1 No alias component PsbQ of PS-II oxygen-evolving center 0.03 Archaeplastida
Pp3c13_6570V3.1 No alias photosystem II subunit QA 0.04 Archaeplastida
Pp3c3_2620V3.1 No alias photosystem II subunit QA 0.03 Archaeplastida
Pp3c5_4110V3.1 No alias photosystem II subunit QA 0.02 Archaeplastida
Smo106248 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.04 Archaeplastida
Zm00001e007556_P001 No alias PsbQ-like protein 3, chloroplastic OS=Arabidopsis... 0.1 Archaeplastida
Zm00001e010513_P001 No alias component PsbQ of PS-II oxygen-evolving center 0.06 Archaeplastida
Zm00001e032657_P001 No alias component PnsL3/PQL2 of NDH lumen subcomplex L 0.07 Archaeplastida
Zm00001e035180_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
AMTR_s00098p00154060 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.04 LandPlants
AT3G01440 PQL1, PQL2 PsbQ-like 1 0.07 LandPlants
GSVIVT01014586001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.08 LandPlants
LOC_Os07g01480.1 No alias component PnsL3/PQL2 of NDH lumen subcomplex L 0.07 LandPlants
Zm00001e032657_P001 No alias component PnsL3/PQL2 of NDH lumen subcomplex L 0.06 LandPlants
AMTR_s00098p00154060 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.03 SeedPlants
AT3G01440 PQL1, PQL2 PsbQ-like 1 0.07 SeedPlants
GSVIVT01014586001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.06 SeedPlants
LOC_Os07g01480.1 No alias component PnsL3/PQL2 of NDH lumen subcomplex L 0.07 SeedPlants
Zm00001e032657_P001 No alias component PnsL3/PQL2 of NDH lumen subcomplex L 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR008797 PSII_PsbQ 86 146
No external refs found!