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  5. Solyc10g005280.1.1

Solyc10g005280.1.1


Description : PPR-type mitochondrial ribosome regulatory protein (PPR336)


Gene families : OG_01_0004280 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004280_tree ,
OG_02_0002954 (LandPlants) Phylogenetic Tree(s): OG_02_0002954_tree ,
OG_03_0000415 (SeedPlants) Phylogenetic Tree(s): OG_03_0000415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005280.1.1
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00106010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.05 Archaeplastida
AT1G61870 PPR336 pentatricopeptide repeat 336 0.09 Archaeplastida
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Archaeplastida
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.13 Archaeplastida
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 Archaeplastida
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.06 Archaeplastida
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.07 Archaeplastida
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 LandPlants
AMTR_s00029p00106010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.05 LandPlants
AT1G61870 PPR336 pentatricopeptide repeat 336 0.07 LandPlants
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 LandPlants
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.13 LandPlants
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 LandPlants
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 LandPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.06 LandPlants
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 LandPlants
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
AMTR_s00029p00106010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.05 SeedPlants
AMTR_s00032p00197250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55890,... 0.05 SeedPlants
AT1G55890 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 SeedPlants
AT1G61870 PPR336 pentatricopeptide repeat 336 0.06 SeedPlants
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 SeedPlants
AT3G13150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 SeedPlants
AT3G13160 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 SeedPlants
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 SeedPlants
GSVIVT01005273001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.03 SeedPlants
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.03 SeedPlants
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 SeedPlants
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 SeedPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.05 SeedPlants
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.05 SeedPlants
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.11 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 280 313
IPR002885 Pentatricopeptide_repeat 327 351
IPR002885 Pentatricopeptide_repeat 117 141
IPR002885 Pentatricopeptide_repeat 179 226
No external refs found!