Solyc09g010450.1.1


Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana (sp|q9lff1|pp281_arath : 1045.0)


Gene families : OG_01_0010963 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010963_tree ,
OG_02_0010911 (LandPlants) Phylogenetic Tree(s): OG_02_0010911_tree ,
OG_03_0010842 (SeedPlants) Phylogenetic Tree(s): OG_03_0010842_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g010450.1.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.04 Archaeplastida
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.13 Archaeplastida
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.12 Archaeplastida
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.08 Archaeplastida
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.03 LandPlants
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.07 LandPlants
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.12 LandPlants
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.1 LandPlants
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.07 LandPlants
AMTR_s00012p00087690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g53700,... 0.03 SeedPlants
AT3G53700 MEE40 Pentatricopeptide repeat (PPR) superfamily protein 0.06 SeedPlants
GSVIVT01025524001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.12 SeedPlants
LOC_Os03g40020.1 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.1 SeedPlants
Zm00001e004314_P001 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.07 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 200
IPR002885 Pentatricopeptide_repeat 412 460
IPR002885 Pentatricopeptide_repeat 275 321
IPR002885 Pentatricopeptide_repeat 483 531
IPR002885 Pentatricopeptide_repeat 555 601
IPR002885 Pentatricopeptide_repeat 626 670
IPR002885 Pentatricopeptide_repeat 342 391
IPR002885 Pentatricopeptide_repeat 203 249
No external refs found!