Cre09.g415950


Description : 29.2.1.1.1.2.6 protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L6 embryo defective 2394 (emb2394)


Gene families : OG_01_0005747 (Gene family) Phylogenetic Tree(s): OG0005747_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Cre09.g415950
Cluster HCCA cluster: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT1G05190 emb2394 Ribosomal protein L6 family 0.22 Gene family
GSVIVT01030599001 No alias 29.2.1.1.1.2.6 protein.synthesis.ribosomal... 0.08 Gene family
LOC_Os03g24020 Os03g0356300 29.2.1.1.1.2.6 protein.synthesis.ribosomal... 0.06 Gene family
LOC_Os03g54040 Os03g0751400 29.2.1.1.1.2.6 protein.synthesis.ribosomal... 0.16 Gene family
MA_54628g0010 No alias 29.2.1.1.1.2.6 protein.synthesis.ribosomal... 0.01 Gene family
Solyc12g100160.2.1 Solyc12g100160.2 29.2.1.1.1.2.6 protein.synthesis.ribosomal... 0.14 Gene family
Zm00001d029201 GRMZM2G086788 29.2.1.1.1.2.6 protein.synthesis.ribosomal... 0.07 Gene family
Zm00001d047462 GRMZM2G170870 29.2.1.1.1.2.6 protein.synthesis.ribosomal... 0.15 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan
CC GO:0005840 ribosome IEA InterProScan
BP GO:0006412 translation IEA InterProScan
MF GO:0019843 rRNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 36 107
IPR020040 Ribosomal_L6_a/b-dom 115 189
No external refs found!