Solyc08g081000.3.1


Description : histone demethylase (KDM5). transcription factor (JUMONJI)


Gene families : OG_01_0001111 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001111_tree ,
OG_02_0005382 (LandPlants) Phylogenetic Tree(s): OG_02_0005382_tree ,
OG_03_0006202 (SeedPlants) Phylogenetic Tree(s): OG_03_0006202_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g081000.3.1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
AT1G08620 PKDM7D Transcription factor jumonji (jmj) family protein / zinc... 0.05 Archaeplastida
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.03 Archaeplastida
Cre03.g169950 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
Cre12.g514250 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 Archaeplastida
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 Archaeplastida
GSVIVT01023517001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.06 Archaeplastida
GSVIVT01028351001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 Archaeplastida
GSVIVT01037956001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 Archaeplastida
Gb_27431 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 Archaeplastida
MA_10434186g0010 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 Archaeplastida
Mp6g20340.1 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.03 Archaeplastida
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 Archaeplastida
Pp3c21_10100V3.1 No alias JUMONJI 14 0.02 Archaeplastida
Zm00001e030938_P001 No alias histone demethylase (PKDM7). transcription factor (JUMONJI) 0.04 Archaeplastida
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.03 LandPlants
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 LandPlants
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 LandPlants
MA_10436180g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp8g17910.1 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 LandPlants
Pp3c21_10100V3.1 No alias JUMONJI 14 0.02 LandPlants
AMTR_s00009p00253500 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.JUMONJI... 0.02 SeedPlants
AT1G63490 No alias transcription factor jumonji (jmjC) domain-containing protein 0.03 SeedPlants
GSVIVT01019761001 No alias RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 SeedPlants
Gb_26073 No alias histone demethylase (KDM5). transcription factor (JUMONJI) 0.02 SeedPlants
MA_10436180g0010 No alias no hits & (original description: none) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004198 Znf_C5HC2 627 679
IPR013637 Lys_sp_deMease-like_dom 893 1186
IPR013637 Lys_sp_deMease-like_dom 1146 1410
IPR001606 ARID_dom 107 188
IPR019787 Znf_PHD-finger 247 294
IPR003347 JmjC_dom 418 534
IPR003349 JmjN 32 65
No external refs found!