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  5. Solyc08g068230.4.1

Solyc08g068230.4.1


Description : Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana (sp|q8gz63|pp397_arath : 576.0)


Gene families : OG_01_0009354 (Archaeplastida) Phylogenetic Tree(s): OG_01_0009354_tree ,
OG_02_0007114 (LandPlants) Phylogenetic Tree(s): OG_02_0007114_tree ,
OG_03_0006861 (SeedPlants) Phylogenetic Tree(s): OG_03_0006861_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g068230.4.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00045690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g25630... 0.03 Archaeplastida
AT5G25630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
GSVIVT01035672001 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.1 Archaeplastida
MA_38077g0010 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.02 Archaeplastida
Smo21211 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.03 Archaeplastida
AMTR_s00109p00045690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g25630... 0.02 LandPlants
AT5G21222 No alias protein kinase family protein 0.07 LandPlants
AT5G25630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 LandPlants
GSVIVT01035672001 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.09 LandPlants
Gb_09464 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.06 LandPlants
MA_38077g0010 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.02 LandPlants
Pp3c16_9240V3.1 No alias protein kinase family protein 0.04 LandPlants
Zm00001e034408_P002 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.03 LandPlants
AMTR_s00109p00045690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g25630... 0.02 SeedPlants
AT5G21222 No alias protein kinase family protein 0.07 SeedPlants
AT5G25630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 SeedPlants
GSVIVT01035672001 No alias Pentatricopeptide repeat-containing protein At5g25630... 0.09 SeedPlants
Gb_09464 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.05 SeedPlants
Zm00001e034408_P002 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 359 388
IPR002885 Pentatricopeptide_repeat 248 279
IPR002885 Pentatricopeptide_repeat 391 439
IPR002885 Pentatricopeptide_repeat 286 335
IPR002885 Pentatricopeptide_repeat 461 509
IPR002885 Pentatricopeptide_repeat 168 228
No external refs found!