AT1G80480 (PTAC17)


Aliases : PTAC17

Description : plastid transcriptionally active 17


Gene families : OG_01_0000971 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000971_tree ,
OG_02_0003359 (LandPlants) Phylogenetic Tree(s): OG_02_0003359_tree ,
OG_03_0003442 (SeedPlants) Phylogenetic Tree(s): OG_03_0003442_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G80480
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 Archaeplastida
GSVIVT01017471001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 Archaeplastida
Gb_00365 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
LOC_Os02g55630.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
MA_10426227g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_174309g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.02 Archaeplastida
Pp3c11_23140V3.1 No alias plastid transcriptionally active 17 0.07 Archaeplastida
Pp3c6_21030V3.1 No alias Cobalamin biosynthesis CobW-like protein 0.02 Archaeplastida
AMTR_s00033p00183310 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 LandPlants
GSVIVT01017471001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 LandPlants
LOC_Os02g55630.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.04 LandPlants
MA_10426227g0010 No alias no hits & (original description: none) 0.03 LandPlants
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.02 LandPlants
Pp3c11_23140V3.1 No alias plastid transcriptionally active 17 0.07 LandPlants
AMTR_s00033p00183310 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 SeedPlants
GSVIVT01017471001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 SeedPlants
LOC_Os02g55630.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.04 SeedPlants
MA_10426227g0010 No alias no hits & (original description: none) 0.03 SeedPlants

Type GO Term Name Evidence Source
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009508 plastid chromosome IDA Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 349 443
IPR003495 CobW/HypB/UreG_dom 90 276
No external refs found!