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  5. Solyc07g056290.2.1

Solyc07g056290.2.1


Description : pectin lyase


Gene families : OG_01_0009777 (Archaeplastida) Phylogenetic Tree(s): OG_01_0009777_tree ,
OG_02_0000281 (LandPlants) Phylogenetic Tree(s): OG_02_0000281_tree ,
OG_03_0000124 (SeedPlants) Phylogenetic Tree(s): OG_03_0000124_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g056290.2.1

Target Alias Description ECC score Gene Family Method Actions
AT1G17150 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01020794001 No alias Polygalacturonase OS=Nicotiana tabacum 0.04 LandPlants
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.02 LandPlants
Solyc01g009640.3.1 No alias No annotation 0.09 LandPlants
Solyc02g069480.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.04 LandPlants
Solyc10g047590.3.1 No alias Polygalacturonase OS=Gossypium hirsutum... 0.07 LandPlants
GSVIVT01020794001 No alias Polygalacturonase OS=Nicotiana tabacum 0.04 SeedPlants
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.02 SeedPlants
Solyc01g009640.3.1 No alias No annotation 0.07 SeedPlants
Solyc02g069480.3.1 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.04 SeedPlants
Solyc10g047590.3.1 No alias Polygalacturonase OS=Gossypium hirsutum... 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 62 387
No external refs found!