AT1G79280 (NUA, AtTPR)

Aliases : NUA, AtTPR

Description : nuclear pore anchor

Gene families : OG_01_0003427 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003427_tree ,
OG_02_0004010 (LandPlants) Phylogenetic Tree(s): OG_02_0004010_tree ,
OG_03_0005364 (SeedPlants) Phylogenetic Tree(s): OG_03_0005364_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G79280
Cluster	HCCA: Cluster_198

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000404.46	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.04	Archaeplastida
GSVIVT01036698001	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.13	Archaeplastida
Gb_36757	No alias	NUA nucleoporin of nuclear pore complex	0.05	Archaeplastida
LOC_Os02g50790.2	No alias	no hits & (original description: none)	0.06	Archaeplastida
LOC_Os02g50799.1	No alias	NUA nucleoporin of nuclear pore complex	0.04	Archaeplastida
MA_10287420g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10435343g0040	No alias	NUA nucleoporin of nuclear pore complex	0.07	Archaeplastida
MA_109011g0010	No alias	NUA nucleoporin of nuclear pore complex	0.07	Archaeplastida
MA_113769g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_125713g0010	No alias	no hits & (original description: none)	0.1	Archaeplastida
MA_33097g0010	No alias	Nuclear-pore anchor OS=Arabidopsis thaliana...	0.07	Archaeplastida
MA_929786g0010	No alias	NUA nucleoporin of nuclear pore complex	0.03	Archaeplastida
Mp2g14600.1	No alias	NUA nucleoporin of nuclear pore complex	0.07	Archaeplastida
Pp3c8_8020V3.1	No alias	nuclear pore anchor	0.12	Archaeplastida
Smo444132	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.06	Archaeplastida
Solyc06g053570.2.1	No alias	NUA nucleoporin of nuclear pore complex	0.09	Archaeplastida
Solyc06g053590.4.1	No alias	No annotation	0.05	Archaeplastida
Zm00001e023916_P004	No alias	NUA nucleoporin of nuclear pore complex	0.11	Archaeplastida
GSVIVT01036698001	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.1	LandPlants
Gb_36757	No alias	NUA nucleoporin of nuclear pore complex	0.03	LandPlants
LOC_Os02g50799.1	No alias	NUA nucleoporin of nuclear pore complex	0.04	LandPlants
MA_10435343g0040	No alias	NUA nucleoporin of nuclear pore complex	0.04	LandPlants
MA_109011g0010	No alias	NUA nucleoporin of nuclear pore complex	0.05	LandPlants
MA_125713g0010	No alias	no hits & (original description: none)	0.06	LandPlants
MA_33097g0010	No alias	Nuclear-pore anchor OS=Arabidopsis thaliana...	0.03	LandPlants
Mp2g14600.1	No alias	NUA nucleoporin of nuclear pore complex	0.05	LandPlants
Pp3c8_8020V3.1	No alias	nuclear pore anchor	0.09	LandPlants
Smo444132	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.05	LandPlants
Solyc06g053570.2.1	No alias	NUA nucleoporin of nuclear pore complex	0.06	LandPlants
Zm00001e023916_P004	No alias	NUA nucleoporin of nuclear pore complex	0.09	LandPlants
GSVIVT01036698001	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.1	SeedPlants
Gb_36757	No alias	NUA nucleoporin of nuclear pore complex	0.03	SeedPlants
LOC_Os02g50799.1	No alias	NUA nucleoporin of nuclear pore complex	0.03	SeedPlants
MA_10435343g0040	No alias	NUA nucleoporin of nuclear pore complex	0.05	SeedPlants
MA_125713g0010	No alias	no hits & (original description: none)	0.06	SeedPlants
MA_33097g0010	No alias	Nuclear-pore anchor OS=Arabidopsis thaliana...	0.05	SeedPlants
Solyc06g053570.2.1	No alias	NUA nucleoporin of nuclear pore complex	0.06	SeedPlants
Zm00001e023916_P004	No alias	NUA nucleoporin of nuclear pore complex	0.09	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005635	nuclear envelope	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009910	negative regulation of flower development	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IMP	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0032269	negative regulation of cellular protein metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033233	regulation of protein sumoylation	None	Extended
BP	GO:0033234	negative regulation of protein sumoylation	IMP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048443	stamen development	IMP	Interproscan
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000242	negative regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR012929	TPR/MLP1	1045	1171

External Links

No external refs found!

AT1G79280 (NUA, AtTPR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation