Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Gene families : OG_01_0002447 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002447_tree ,
OG_02_0002022 (LandPlants) Phylogenetic Tree(s): OG_02_0002022_tree ,
OG_03_0001683 (SeedPlants) Phylogenetic Tree(s): OG_03_0001683_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT1G79090 | |
Cluster | HCCA: Cluster_247 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre06.g278203 | No alias | No description available | 0.02 | Archaeplastida | |
GSVIVT01015721001 | No alias | Protein PAT1 homolog 1 OS=Arabidopsis thaliana | 0.1 | Archaeplastida | |
GSVIVT01020437001 | No alias | No description available | 0.06 | Archaeplastida | |
Gb_01548 | No alias | mRNA decay factor (PAT1) | 0.03 | Archaeplastida | |
MA_10376188g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
Mp4g14040.1 | No alias | mRNA decay factor (PAT1) | 0.03 | Archaeplastida | |
Pp3c8_20970V3.1 | No alias | No annotation | 0.02 | Archaeplastida | |
Solyc05g016240.4.1 | No alias | mRNA decay factor (PAT1) | 0.06 | Archaeplastida | |
Solyc12g017260.2.1 | No alias | mRNA decay factor (PAT1) | 0.1 | Archaeplastida | |
AMTR_s00155p00028780 | evm_27.TU.AmTr_v1... | Protein PAT1 homolog OS=Arabidopsis thaliana | 0.02 | LandPlants | |
GSVIVT01015721001 | No alias | Protein PAT1 homolog 1 OS=Arabidopsis thaliana | 0.09 | LandPlants | |
GSVIVT01020437001 | No alias | No description available | 0.06 | LandPlants | |
Gb_01548 | No alias | mRNA decay factor (PAT1) | 0.02 | LandPlants | |
MA_10376188g0010 | No alias | no hits & (original description: none) | 0.02 | LandPlants | |
Mp4g14040.1 | No alias | mRNA decay factor (PAT1) | 0.03 | LandPlants | |
Pp3c8_20970V3.1 | No alias | No annotation | 0.02 | LandPlants | |
Smo165728 | No alias | Protein PAT1 homolog OS=Arabidopsis thaliana | 0.02 | LandPlants | |
Solyc05g016240.4.1 | No alias | mRNA decay factor (PAT1) | 0.04 | LandPlants | |
Solyc12g017260.2.1 | No alias | mRNA decay factor (PAT1) | 0.09 | LandPlants | |
AMTR_s00155p00028780 | evm_27.TU.AmTr_v1... | Protein PAT1 homolog OS=Arabidopsis thaliana | 0.02 | SeedPlants | |
GSVIVT01015721001 | No alias | Protein PAT1 homolog 1 OS=Arabidopsis thaliana | 0.08 | SeedPlants | |
GSVIVT01020437001 | No alias | No description available | 0.06 | SeedPlants | |
Gb_01548 | No alias | mRNA decay factor (PAT1) | 0.02 | SeedPlants | |
MA_10376188g0010 | No alias | no hits & (original description: none) | 0.02 | SeedPlants | |
Solyc05g016240.4.1 | No alias | mRNA decay factor (PAT1) | 0.04 | SeedPlants | |
Solyc12g017260.2.1 | No alias | mRNA decay factor (PAT1) | 0.09 | SeedPlants |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005737 | cytoplasm | ISM | Interproscan |
BP | GO:0006486 | protein glycosylation | RCA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
No InterPro domains available for this sequence
No external refs found! |