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AT1G79090


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).


Gene families : OG_01_0002447 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002447_tree ,
OG_02_0002022 (LandPlants) Phylogenetic Tree(s): OG_02_0002022_tree ,
OG_03_0001683 (SeedPlants) Phylogenetic Tree(s): OG_03_0001683_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G79090
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Cre06.g278203 No alias No description available 0.02 Archaeplastida
GSVIVT01015721001 No alias Protein PAT1 homolog 1 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01020437001 No alias No description available 0.06 Archaeplastida
Gb_01548 No alias mRNA decay factor (PAT1) 0.03 Archaeplastida
MA_10376188g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g14040.1 No alias mRNA decay factor (PAT1) 0.03 Archaeplastida
Pp3c8_20970V3.1 No alias No annotation 0.02 Archaeplastida
Solyc05g016240.4.1 No alias mRNA decay factor (PAT1) 0.06 Archaeplastida
Solyc12g017260.2.1 No alias mRNA decay factor (PAT1) 0.1 Archaeplastida
AMTR_s00155p00028780 evm_27.TU.AmTr_v1... Protein PAT1 homolog OS=Arabidopsis thaliana 0.02 LandPlants
GSVIVT01015721001 No alias Protein PAT1 homolog 1 OS=Arabidopsis thaliana 0.09 LandPlants
GSVIVT01020437001 No alias No description available 0.06 LandPlants
Gb_01548 No alias mRNA decay factor (PAT1) 0.02 LandPlants
MA_10376188g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp4g14040.1 No alias mRNA decay factor (PAT1) 0.03 LandPlants
Pp3c8_20970V3.1 No alias No annotation 0.02 LandPlants
Smo165728 No alias Protein PAT1 homolog OS=Arabidopsis thaliana 0.02 LandPlants
Solyc05g016240.4.1 No alias mRNA decay factor (PAT1) 0.04 LandPlants
Solyc12g017260.2.1 No alias mRNA decay factor (PAT1) 0.09 LandPlants
AMTR_s00155p00028780 evm_27.TU.AmTr_v1... Protein PAT1 homolog OS=Arabidopsis thaliana 0.02 SeedPlants
GSVIVT01015721001 No alias Protein PAT1 homolog 1 OS=Arabidopsis thaliana 0.08 SeedPlants
GSVIVT01020437001 No alias No description available 0.06 SeedPlants
Gb_01548 No alias mRNA decay factor (PAT1) 0.02 SeedPlants
MA_10376188g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc05g016240.4.1 No alias mRNA decay factor (PAT1) 0.04 SeedPlants
Solyc12g017260.2.1 No alias mRNA decay factor (PAT1) 0.09 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!