AT1G78815 (LSH7)


Aliases : LSH7

Description : Protein of unknown function (DUF640)


Gene families : OG_01_0000579 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000579_tree ,
OG_02_0000324 (LandPlants) Phylogenetic Tree(s): OG_02_0000324_tree ,
OG_03_0000239 (SeedPlants) Phylogenetic Tree(s): OG_03_0000239_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G78815
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00052610 evm_27.TU.AmTr_v1... Protein G1-like2 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AMTR_s00153p00047660 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.03 Archaeplastida
AMTR_s00155p00022580 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.04 Archaeplastida
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.03 Archaeplastida
GSVIVT01021754001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 Archaeplastida
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.03 Archaeplastida
LOC_Os02g07030.1 No alias Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os06g46030.1 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida
MA_12926g0010 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 Archaeplastida
Mp2g00330.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.06 Archaeplastida
Solyc06g082210.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.05 Archaeplastida
Solyc10g008000.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 Archaeplastida
Zm00001e027222_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.02 Archaeplastida
Zm00001e031512_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.04 Archaeplastida
AMTR_s00155p00022580 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 LandPlants
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.03 LandPlants
GSVIVT01021754001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 LandPlants
LOC_Os05g28040.1 No alias Protein G1-like9 OS=Oryza sativa subsp. indica... 0.02 LandPlants
LOC_Os05g39500.1 No alias Protein G1-like8 OS=Oryza sativa subsp. japonica... 0.02 LandPlants
Mp2g00330.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 LandPlants
Solyc04g009980.4.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.02 LandPlants
Solyc06g082210.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.05 LandPlants
Solyc10g007310.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 LandPlants
Zm00001e019403_P001 No alias Protein G1-like7 OS=Oryza sativa subsp. indica... 0.02 LandPlants
Zm00001e027222_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.02 LandPlants
Zm00001e028824_P001 No alias Protein G1-like8 OS=Oryza sativa subsp. indica... 0.02 LandPlants
AMTR_s00155p00022580 evm_27.TU.AmTr_v1... Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 SeedPlants
LOC_Os02g41460.1 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.02 SeedPlants
Solyc06g082210.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... 0.05 SeedPlants
Zm00001e027222_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.02 SeedPlants
Zm00001e028824_P001 No alias Protein G1-like8 OS=Oryza sativa subsp. indica... 0.02 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009691 cytokinin biosynthetic process RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006936 ALOG_dom 30 153
No external refs found!