AMTR_s00009p00218020 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00009.155

Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component

Gene families : OG_01_0003455 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003455_tree ,
OG_02_0003421 (LandPlants) Phylogenetic Tree(s): OG_02_0003421_tree ,
OG_03_0006079 (SeedPlants) Phylogenetic Tree(s): OG_03_0006079_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00009p00218020
Cluster	HCCA: Cluster_241

Target	Alias	Description	ECC score	Gene Family Method
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.15	Archaeplastida
AT5G52470	FIB1, ATFIB1,...	fibrillarin 1	0.06	Archaeplastida
Cpa\|evm.model.tig00001049.16	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.03	Archaeplastida
Cre02.g077300	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.05	Archaeplastida
GSVIVT01028887001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.06	Archaeplastida
Gb_33899	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.07	Archaeplastida
LOC_Os02g57590.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.08	Archaeplastida
LOC_Os05g08360.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.1	Archaeplastida
MA_124463g0010	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.07	Archaeplastida
Mp2g12880.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	Archaeplastida
Pp3c16_12410V3.1	No alias	fibrillarin 2	0.04	Archaeplastida
Pp3c27_4160V3.1	No alias	fibrillarin 2	0.03	Archaeplastida
Pp3c5_11200V3.1	No alias	fibrillarin 2	0.07	Archaeplastida
Pp3c6_12420V3.1	No alias	fibrillarin 2	0.03	Archaeplastida
Smo171051	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.02	Archaeplastida
Solyc03g025270.3.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.09	Archaeplastida
Zm00001e023572_P001	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.03	Archaeplastida
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.13	LandPlants
AT5G52470	FIB1, ATFIB1,...	fibrillarin 1	0.06	LandPlants
GSVIVT01028887001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.04	LandPlants
Gb_33899	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.07	LandPlants
LOC_Os02g57590.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.08	LandPlants
LOC_Os05g08360.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.09	LandPlants
MA_124463g0010	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.06	LandPlants
Mp2g12880.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.04	LandPlants
Pp3c16_12410V3.1	No alias	fibrillarin 2	0.03	LandPlants
Pp3c27_4160V3.1	No alias	fibrillarin 2	0.03	LandPlants
Pp3c5_11200V3.1	No alias	fibrillarin 2	0.07	LandPlants
Pp3c6_12420V3.1	No alias	fibrillarin 2	0.03	LandPlants
Smo171051	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.02	LandPlants
Solyc03g025270.3.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.09	LandPlants
Zm00001e023572_P001	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.02	LandPlants
AT4G25630	FIB2, ATFIB2	fibrillarin 2	0.13	SeedPlants
AT5G52470	FIB1, ATFIB1,...	fibrillarin 1	0.06	SeedPlants
GSVIVT01028887001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.04	SeedPlants
Gb_33899	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.07	SeedPlants
LOC_Os02g57590.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.08	SeedPlants
LOC_Os05g08360.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.09	SeedPlants
MA_124463g0010	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.06	SeedPlants
Solyc03g025270.3.1	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.09	SeedPlants
Zm00001e023572_P001	No alias	methyltransferase component Nop1/fibrillarin of snoRNP...	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000692	Fibrillarin	62	289

External Links

No external refs found!

AMTR_s00009p00218020 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation