Solyc07g043600.4.1


Description : plastidial RNA processing factor (PPR287)


Gene families : OG_01_0008036 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008036_tree ,
OG_02_0007862 (LandPlants) Phylogenetic Tree(s): OG_02_0007862_tree ,
OG_03_0010058 (SeedPlants) Phylogenetic Tree(s): OG_03_0010058_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g043600.4.1
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.02 Archaeplastida
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.18 Archaeplastida
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.19 Archaeplastida
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.04 Archaeplastida
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.12 Archaeplastida
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.06 Archaeplastida
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.11 Archaeplastida
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 Archaeplastida
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.06 Archaeplastida
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.02 Archaeplastida
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.02 LandPlants
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.17 LandPlants
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.18 LandPlants
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.03 LandPlants
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.11 LandPlants
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.06 LandPlants
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.11 LandPlants
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 LandPlants
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.05 LandPlants
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.02 LandPlants
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.02 SeedPlants
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.16 SeedPlants
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.18 SeedPlants
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.03 SeedPlants
LOC_Os08g09270.1 No alias plastidial RNA processing factor (PPR287) 0.11 SeedPlants
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.05 SeedPlants
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 146 171
IPR002885 Pentatricopeptide_repeat 248 291
IPR002885 Pentatricopeptide_repeat 384 433
IPR002885 Pentatricopeptide_repeat 175 220
IPR002885 Pentatricopeptide_repeat 455 499
IPR002885 Pentatricopeptide_repeat 314 362
No external refs found!