1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g043580.4.1

Solyc07g043580.4.1


Description : transcription factor (bHLH). PIF red/far-red light perception transcriptional regulator


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g043580.4.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00141060 evm_27.TU.AmTr_v1... External stimuli response.light.red/far red light.PIF... 0.04 Archaeplastida
AMTR_s00066p00183410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.04 Archaeplastida
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.03 Archaeplastida
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.06 Archaeplastida
GSVIVT01022111001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 Archaeplastida
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
Gb_30387 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_306658g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_78485g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Zm00001e002331_P003 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
AMTR_s00045p00141060 evm_27.TU.AmTr_v1... External stimuli response.light.red/far red light.PIF... 0.04 LandPlants
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.04 LandPlants
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.03 LandPlants
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.03 LandPlants
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.06 LandPlants
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 LandPlants
Gb_30387 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 LandPlants
Mp3g17350.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.06 LandPlants
Zm00001e002331_P003 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.03 LandPlants
AMTR_s00045p00141060 evm_27.TU.AmTr_v1... External stimuli response.light.red/far red light.PIF... 0.04 SeedPlants
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.06 SeedPlants
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 SeedPlants
Gb_30387 No alias transcription factor (bHLH) 0.03 SeedPlants
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 SeedPlants
MA_26114g0010 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.04 SeedPlants
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011598 bHLH_dom 133 179
No external refs found!