Solyc07g020870.3.1


Description : ubiquitin E3 ligase (CERBERUS/LIN)


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0003337 (SeedPlants) Phylogenetic Tree(s): OG_03_0003337_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g020870.3.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00110960 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
LOC_Os02g07190.1 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 Archaeplastida
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.05 Archaeplastida
MA_15009g0010 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.04 Archaeplastida
MA_394030g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_7193588g0010 No alias No annotation 0.04 Archaeplastida
Zm00001e016398_P001 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.05 Archaeplastida
AMTR_s00032p00110960 evm_27.TU.AmTr_v1... No description available 0.04 LandPlants
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.04 LandPlants
MA_15009g0010 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.04 LandPlants
MA_394030g0010 No alias no hits & (original description: none) 0.03 LandPlants
MA_7193588g0010 No alias No annotation 0.03 LandPlants
MA_1171557g0010 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.01 SeedPlants
MA_15009g0010 No alias Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus... 0.01 SeedPlants
Zm00001e016398_P001 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 181 252
IPR001680 WD40_repeat 864 899
No external refs found!