Solyc06g069760.3.1

Description : transcription factor (DOF)

Gene families : OG_01_0000060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000060_tree ,
OG_02_0000025 (LandPlants) Phylogenetic Tree(s): OG_02_0000025_tree ,
OG_03_0001523 (SeedPlants) Phylogenetic Tree(s): OG_03_0001523_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g069760.3.1
Cluster	HCCA: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00248860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00010p00264070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
AMTR_s00119p00099150	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.1	Archaeplastida
AT3G47500	CDF3	cycling DOF factor 3	0.08	Archaeplastida
AT4G24060	No alias	Dof-type zinc finger DNA-binding family protein	0.01	Archaeplastida
AT5G62430	CDF1	cycling DOF factor 1	0.08	Archaeplastida
GSVIVT01011433001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.01	Archaeplastida
GSVIVT01019619001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01019969001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.13	Archaeplastida
GSVIVT01029943001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.12	Archaeplastida
Gb_07177	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os01g15900.1	No alias	transcription factor (DOF)	0.01	Archaeplastida
LOC_Os03g07360.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os03g38870.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
LOC_Os03g60630.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os07g48570.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os10g26620.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
MA_175298g0010	No alias	transcription factor (DOF)	0.02	Archaeplastida
MA_2430g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_7537g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
Pp3c13_21190V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c3_26370V3.1	No alias	cycling DOF factor 3	0.04	Archaeplastida
Solyc02g088070.3.1	No alias	transcription factor (DOF)	0.12	Archaeplastida
Solyc06g062520.1.1	No alias	transcription factor (DOF)	0.07	Archaeplastida
Zm00001e000526_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e017319_P001	No alias	transcription factor (DOF)	0.06	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.02	Archaeplastida
AMTR_s00006p00248860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.01	LandPlants
AMTR_s00010p00264070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	LandPlants
AMTR_s00119p00099150	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.05	LandPlants
AT1G26790	No alias	Dof-type zinc finger DNA-binding family protein	0.09	LandPlants
AT3G47500	CDF3	cycling DOF factor 3	0.08	LandPlants
AT4G24060	No alias	Dof-type zinc finger DNA-binding family protein	0.01	LandPlants
AT5G62430	CDF1	cycling DOF factor 1	0.08	LandPlants
GSVIVT01011433001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.07	LandPlants
GSVIVT01016538001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.01	LandPlants
GSVIVT01019619001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	LandPlants
GSVIVT01019969001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.06	LandPlants
GSVIVT01029943001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.12	LandPlants
LOC_Os01g15900.1	No alias	transcription factor (DOF)	0.01	LandPlants
LOC_Os03g07360.1	No alias	transcription factor (DOF)	0.04	LandPlants
LOC_Os03g38870.1	No alias	transcription factor (DOF)	0.07	LandPlants
LOC_Os03g60630.1	No alias	transcription factor (DOF)	0.04	LandPlants
LOC_Os07g48570.1	No alias	transcription factor (DOF)	0.05	LandPlants
LOC_Os10g26620.1	No alias	transcription factor (DOF)	0.02	LandPlants
Pp3c13_21190V3.1	No alias	cycling DOF factor 3	0.02	LandPlants
Pp3c3_26370V3.1	No alias	cycling DOF factor 3	0.02	LandPlants
Solyc02g088070.3.1	No alias	transcription factor (DOF)	0.12	LandPlants
Solyc06g062520.1.1	No alias	transcription factor (DOF)	0.07	LandPlants
Zm00001e000526_P001	No alias	transcription factor (DOF)	0.02	LandPlants
Zm00001e017319_P001	No alias	transcription factor (DOF)	0.05	LandPlants
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.02	LandPlants
AT3G47500	CDF3	cycling DOF factor 3	0.04	SeedPlants
AT5G62430	CDF1	cycling DOF factor 1	0.04	SeedPlants
GSVIVT01011433001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.07	SeedPlants
GSVIVT01019969001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.06	SeedPlants
GSVIVT01029943001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.12	SeedPlants
LOC_Os01g15900.1	No alias	transcription factor (DOF)	0.01	SeedPlants
LOC_Os03g07360.1	No alias	transcription factor (DOF)	0.04	SeedPlants
LOC_Os07g48570.1	No alias	transcription factor (DOF)	0.05	SeedPlants
LOC_Os10g26620.1	No alias	transcription factor (DOF)	0.02	SeedPlants
Solyc02g088070.3.1	No alias	transcription factor (DOF)	0.11	SeedPlants
Zm00001e000526_P001	No alias	transcription factor (DOF)	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	142	198

External Links

No external refs found!

Solyc06g069760.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation