AT1G75990

Description : PAM domain (PCI/PINT associated module) protein

Gene families : OG_01_0002783 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002783_tree ,
OG_02_0002632 (LandPlants) Phylogenetic Tree(s): OG_02_0002632_tree ,
OG_03_0005170 (SeedPlants) Phylogenetic Tree(s): OG_03_0005170_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G75990
Cluster	HCCA: Cluster_260

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020614.5	No alias	Protein degradation.26S proteasome.regulatory...	0.06	Archaeplastida
Cre06.g275650	No alias	Protein degradation.26S proteasome.regulatory...	0.1	Archaeplastida
GSVIVT01024003001	No alias	Protein degradation.26S proteasome.regulatory...	0.04	Archaeplastida
LOC_Os08g43640.1	No alias	regulatory component RPN3 of 26S proteasome	0.09	Archaeplastida
LOC_Os09g37000.1	No alias	regulatory component RPN3 of 26S proteasome	0.06	Archaeplastida
MA_8584g0010	No alias	regulatory component RPN3 of 26S proteasome	0.03	Archaeplastida
Mp2g07250.1	No alias	regulatory component RPN3 of 26S proteasome	0.04	Archaeplastida
Pp3c17_19240V3.1	No alias	PAM domain (PCI/PINT associated module) protein	0.04	Archaeplastida
Pp3c1_37278V3.1	No alias	PAM domain (PCI/PINT associated module) protein	0.03	Archaeplastida
Solyc01g111710.4.1	No alias	no hits & (original description: none)	0.08	Archaeplastida
Zm00001e003986_P001	No alias	regulatory component RPN3 of 26S proteasome	0.08	Archaeplastida
Zm00001e024698_P001	No alias	regulatory component RPN3 of 26S proteasome	0.06	Archaeplastida
GSVIVT01024003001	No alias	Protein degradation.26S proteasome.regulatory...	0.04	LandPlants
LOC_Os08g43640.1	No alias	regulatory component RPN3 of 26S proteasome	0.09	LandPlants
LOC_Os09g37000.1	No alias	regulatory component RPN3 of 26S proteasome	0.06	LandPlants
MA_8584g0010	No alias	regulatory component RPN3 of 26S proteasome	0.03	LandPlants
Mp2g07250.1	No alias	regulatory component RPN3 of 26S proteasome	0.04	LandPlants
Pp3c17_19240V3.1	No alias	PAM domain (PCI/PINT associated module) protein	0.04	LandPlants
Pp3c1_37278V3.1	No alias	PAM domain (PCI/PINT associated module) protein	0.03	LandPlants
Smo231540	No alias	Protein degradation.26S proteasome.regulatory...	0.02	LandPlants
Solyc01g111710.4.1	No alias	no hits & (original description: none)	0.08	LandPlants
Zm00001e003986_P001	No alias	regulatory component RPN3 of 26S proteasome	0.08	LandPlants
Zm00001e024698_P001	No alias	regulatory component RPN3 of 26S proteasome	0.06	LandPlants
LOC_Os08g43640.1	No alias	regulatory component RPN3 of 26S proteasome	0.09	SeedPlants
LOC_Os09g37000.1	No alias	regulatory component RPN3 of 26S proteasome	0.05	SeedPlants
Solyc01g111710.4.1	No alias	no hits & (original description: none)	0.08	SeedPlants
Zm00001e003986_P001	No alias	regulatory component RPN3 of 26S proteasome	0.08	SeedPlants
Zm00001e024698_P001	No alias	regulatory component RPN3 of 26S proteasome	0.06	SeedPlants

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IDA	Interproscan
BP	GO:0001558	regulation of cell growth	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-dependent DNA replication	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030163	protein catabolic process	TAS	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042023	DNA endoreduplication	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051510	regulation of unidimensional cell growth	RCA	Interproscan
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
CC	GO:1905369	endopeptidase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013586	26S_Psome_reg_C	420	486
IPR000717	PCI_dom	311	416

External Links

No external refs found!

AT1G75990

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation