Solyc06g054560.3.1


Description : chromatin remodeling factor (Iswi)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0003200 (LandPlants) Phylogenetic Tree(s): OG_02_0003200_tree ,
OG_03_0004460 (SeedPlants) Phylogenetic Tree(s): OG_03_0004460_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g054560.3.1
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00063470 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.RNA-independent... 0.1 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.04 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.02 Archaeplastida
AT5G18620 CHR17 chromatin remodeling factor17 0.03 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.01 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.01 Archaeplastida
Cpa|evm.model.tig00000863.2 No alias TATA-binding protein-associated factor BTAF1... 0.01 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.05 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre16.g647602 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
LOC_Os03g51230.2 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.07 Archaeplastida
MA_10437250g0010 No alias Probable helicase CHR10 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
MA_42406g0010 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.06 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
Pp3c10_6710V3.1 No alias SNF2 domain-containing protein / helicase... 0.02 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.02 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.03 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.03 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.06 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c20_11500V3.1 No alias chromatin remodeling 5 0.09 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.03 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.03 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.02 Archaeplastida
Pp3c7_3340V3.1 No alias chromatin-remodeling protein 11 0.02 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.07 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.06 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.1 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.03 LandPlants
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.02 LandPlants
Pp3c7_3340V3.1 No alias chromatin-remodeling protein 11 0.02 LandPlants
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.11 LandPlants
AT5G18620 CHR17 chromatin remodeling factor17 0.02 SeedPlants
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.03 SeedPlants
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.11 SeedPlants
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
MF GO:0031491 nucleosome binding IEA Interproscan
BP GO:0043044 ATP-dependent chromatin remodeling IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR015194 ISWI_HAND-dom 750 835
IPR000330 SNF2_dom 199 466
IPR001650 Helicase_C 489 601
IPR015195 SLIDE 893 1003
No external refs found!