Solyc06g054020.3.1


Description : Probable RNA helicase SDE3 OS=Arabidopsis thaliana (sp|q8gyd9|sde3_arath : 1043.0)


Gene families : OG_01_0002518 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002518_tree ,
OG_02_0003674 (LandPlants) Phylogenetic Tree(s): OG_02_0003674_tree ,
OG_03_0003078 (SeedPlants) Phylogenetic Tree(s): OG_03_0003078_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g054020.3.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272090 evm_27.TU.AmTr_v1... Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G05460 SDE3 P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
GSVIVT01018011001 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.08 Archaeplastida
Gb_16363 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os03g06440.2 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.05 Archaeplastida
AMTR_s00002p00272090 evm_27.TU.AmTr_v1... Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.02 LandPlants
AT1G05460 SDE3 P-loop containing nucleoside triphosphate hydrolases... 0.03 LandPlants
GSVIVT01018011001 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.05 LandPlants
Gb_16363 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.02 LandPlants
LOC_Os03g06440.2 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.05 LandPlants
AMTR_s00002p00272090 evm_27.TU.AmTr_v1... Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.02 SeedPlants
AT1G05460 SDE3 P-loop containing nucleoside triphosphate hydrolases... 0.02 SeedPlants
GSVIVT01018011001 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana 0.04 SeedPlants
LOC_Os03g06440.2 No alias Probable RNA helicase SDE3 OS=Arabidopsis thaliana... 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 600 803
IPR041677 DNA2/NAM7_AAA_11 404 497
IPR041677 DNA2/NAM7_AAA_11 520 592
No external refs found!