Solyc06g009520.3.1


Description : Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana (sp|q9sic9|pp178_arath : 968.0)


Gene families : OG_01_0003985 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003985_tree ,
OG_02_0007762 (LandPlants) Phylogenetic Tree(s): OG_02_0007762_tree ,
OG_03_0009864 (SeedPlants) Phylogenetic Tree(s): OG_03_0009864_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g009520.3.1
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00075520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g31400,... 0.06 Archaeplastida
MA_9324347g0010 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.03 Archaeplastida
Pp3c14_15490V3.1 No alias genomes uncoupled 1 0.03 Archaeplastida
Zm00001e002882_P001 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.07 Archaeplastida
AMTR_s00003p00075520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g31400,... 0.05 LandPlants
Zm00001e002882_P001 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.06 LandPlants
AMTR_s00003p00075520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g31400,... 0.05 SeedPlants
Zm00001e002882_P001 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 507 534
IPR002885 Pentatricopeptide_repeat 107 168
IPR002885 Pentatricopeptide_repeat 174 204
IPR002885 Pentatricopeptide_repeat 401 447
IPR002885 Pentatricopeptide_repeat 369 398
IPR033443 PPR_long 211 359
No external refs found!