Solyc06g008190.1.1


Description : Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana (sp|q9sad9|ppr40_arath : 608.0)


Gene families : OG_01_0010380 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010380_tree ,
OG_02_0000728 (LandPlants) Phylogenetic Tree(s): OG_02_0000728_tree ,
OG_03_0007555 (SeedPlants) Phylogenetic Tree(s): OG_03_0007555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g008190.1.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.02 LandPlants
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 LandPlants
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
GSVIVT01000559001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 LandPlants
Gb_03488 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
MA_292096g0010 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 LandPlants
Smo110457 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 LandPlants
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 LandPlants
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.02 SeedPlants
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 SeedPlants
GSVIVT01000559001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 SeedPlants
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 81 110
IPR002885 Pentatricopeptide_repeat 12 40
IPR002885 Pentatricopeptide_repeat 112 161
IPR002885 Pentatricopeptide_repeat 427 474
IPR002885 Pentatricopeptide_repeat 218 266
IPR002885 Pentatricopeptide_repeat 323 368
IPR002885 Pentatricopeptide_repeat 284 312
IPR002885 Pentatricopeptide_repeat 388 421
No external refs found!