AT1G74850 (PTAC2)


Aliases : PTAC2

Description : plastid transcriptionally active 2


Gene families : OG_01_0008584 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008584_tree ,
OG_02_0007907 (LandPlants) Phylogenetic Tree(s): OG_02_0007907_tree ,
OG_03_0010613 (SeedPlants) Phylogenetic Tree(s): OG_03_0010613_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G74850
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 Archaeplastida
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.12 Archaeplastida
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.16 Archaeplastida
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.11 Archaeplastida
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.14 Archaeplastida
Pp3c11_11830V3.1 No alias plastid transcriptionally active 2 0.16 Archaeplastida
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 Archaeplastida
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 LandPlants
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.11 LandPlants
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.15 LandPlants
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.09 LandPlants
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.14 LandPlants
Pp3c11_11830V3.1 No alias plastid transcriptionally active 2 0.14 LandPlants
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.07 LandPlants
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 LandPlants
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 SeedPlants
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.11 SeedPlants
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.15 SeedPlants
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.09 SeedPlants
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.07 SeedPlants
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing RCA Interproscan
BP GO:0006399 tRNA metabolic process RCA Interproscan
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009508 plastid chromosome IDA Interproscan
BP GO:0009658 chloroplast organization RCA Interproscan
BP GO:0009902 chloroplast relocation RCA Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0010103 stomatal complex morphogenesis RCA Interproscan
BP GO:0010207 photosystem II assembly RCA Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0034660 ncRNA metabolic process RCA Interproscan
BP GO:0035304 regulation of protein dephosphorylation RCA Interproscan
BP GO:0042793 plastid transcription IMP Interproscan
BP GO:0042793 plastid transcription RCA Interproscan
BP GO:0045036 protein targeting to chloroplast RCA Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated IMP Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 234 294
IPR002885 Pentatricopeptide_repeat 514 572
IPR002885 Pentatricopeptide_repeat 163 221
IPR002885 Pentatricopeptide_repeat 315 361
IPR002885 Pentatricopeptide_repeat 385 432
IPR002885 Pentatricopeptide_repeat 459 487
IPR002885 Pentatricopeptide_repeat 599 627
No external refs found!