Solyc05g049950.3.1


Description : component Sm-B of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG_01_0004360 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004360_tree ,
OG_02_0004546 (LandPlants) Phylogenetic Tree(s): OG_02_0004546_tree ,
OG_03_0006110 (SeedPlants) Phylogenetic Tree(s): OG_03_0006110_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g049950.3.1
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00109230 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 Archaeplastida
AT4G20440 smB small nuclear ribonucleoprotein associated protein B 0.11 Archaeplastida
Cre14.g611150 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
GSVIVT01034611001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
LOC_Os07g07220.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.1 Archaeplastida
MA_10426235g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 Archaeplastida
Pp3c10_22940V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 Archaeplastida
Smo8958 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 Archaeplastida
Zm00001e011476_P001 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.07 Archaeplastida
Zm00001e032884_P001 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 Archaeplastida
AMTR_s00004p00109230 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 LandPlants
AT4G20440 smB small nuclear ribonucleoprotein associated protein B 0.11 LandPlants
GSVIVT01034611001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 LandPlants
LOC_Os07g07220.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.1 LandPlants
MA_10426235g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 LandPlants
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 LandPlants
Pp3c10_22940V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 LandPlants
Smo8958 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 LandPlants
Zm00001e011476_P001 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.06 LandPlants
Zm00001e032884_P001 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 LandPlants
AMTR_s00004p00109230 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 SeedPlants
AT4G20440 smB small nuclear ribonucleoprotein associated protein B 0.1 SeedPlants
LOC_Os07g07220.1 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.09 SeedPlants
MA_10426235g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.04 SeedPlants
MA_10435493g0010 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 SeedPlants
Zm00001e011476_P001 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.05 SeedPlants
Zm00001e032884_P001 No alias component Sm-B of U1/U2/U4/U5-associated Sm accessory... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 81
No external refs found!