AT1G73870


Description : B-box type zinc finger protein with CCT domain


Gene families : OG_01_0000884 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000884_tree ,
OG_02_0000594 (LandPlants) Phylogenetic Tree(s): OG_02_0000594_tree ,
OG_03_0000583 (SeedPlants) Phylogenetic Tree(s): OG_03_0000583_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G73870
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
Gb_02486 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
LOC_Os02g49880.1 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
LOC_Os03g50310.1 No alias transcription factor (BBX-CO) 0.06 Archaeplastida
MA_10428386g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_91504g0010 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Pp3c4_7080V3.1 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
Pp3c8_1870V3.1 No alias B-box type zinc finger protein with CCT domain 0.03 Archaeplastida
Smo438000 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 Archaeplastida
Solyc07g008540.3.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Zm00001e012194_P001 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
AMTR_s00025p00156240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 LandPlants
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 LandPlants
LOC_Os03g50310.1 No alias transcription factor (BBX-CO) 0.06 LandPlants
MA_10428386g0020 No alias no hits & (original description: none) 0.02 LandPlants
MA_91504g0010 No alias transcription factor (BBX-CO) 0.03 LandPlants
Pp3c8_1870V3.1 No alias B-box type zinc finger protein with CCT domain 0.03 LandPlants
Smo438000 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 LandPlants
Zm00001e012194_P001 No alias transcription factor (BBX-CO) 0.03 LandPlants
AMTR_s00025p00156240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 SeedPlants
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 SeedPlants
LOC_Os03g50310.1 No alias transcription factor (BBX-CO) 0.05 SeedPlants
MA_10428386g0020 No alias no hits & (original description: none) 0.02 SeedPlants
MA_91504g0010 No alias transcription factor (BBX-CO) 0.02 SeedPlants
Solyc03g119540.3.1 No alias transcription factor (BBX-CO) 0.02 SeedPlants
Zm00001e012194_P001 No alias transcription factor (BBX-CO) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated TAS Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009641 shade avoidance IMP Interproscan
BP GO:0010223 secondary shoot formation IMP Interproscan
BP GO:0045893 positive regulation of transcription, DNA-templated IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000315 Znf_B-box 22 63
IPR010402 CCT_domain 345 387
No external refs found!