Solyc05g012920.3.1


Description : Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana (sp|o81028|pp171_arath : 561.0)


Gene families : OG_01_0010121 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010121_tree ,
OG_02_0010541 (LandPlants) Phylogenetic Tree(s): OG_02_0010541_tree ,
OG_03_0010187 (SeedPlants) Phylogenetic Tree(s): OG_03_0010187_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g012920.3.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00087550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g26790,... 0.07 Archaeplastida
AT1G13800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G26790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.13 Archaeplastida
Gb_41674 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 Archaeplastida
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.07 Archaeplastida
AMTR_s00044p00087550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g26790,... 0.06 LandPlants
AT1G13800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
AT2G26790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 LandPlants
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.14 LandPlants
Gb_41674 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 LandPlants
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.05 LandPlants
AMTR_s00044p00087550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g26790,... 0.05 SeedPlants
AT1G13800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 SeedPlants
AT2G26790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 SeedPlants
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.14 SeedPlants
Gb_41674 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.03 SeedPlants
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 394 427
IPR002885 Pentatricopeptide_repeat 294 342
IPR002885 Pentatricopeptide_repeat 433 481
IPR002885 Pentatricopeptide_repeat 230 272
IPR002885 Pentatricopeptide_repeat 698 745
IPR002885 Pentatricopeptide_repeat 608 661
IPR002885 Pentatricopeptide_repeat 192 219
IPR002885 Pentatricopeptide_repeat 161 186
IPR002885 Pentatricopeptide_repeat 539 566
IPR002885 Pentatricopeptide_repeat 506 533
No external refs found!