AT1G72200

Description : RING/U-box superfamily protein

Gene families : OG_01_0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0001529 (LandPlants) Phylogenetic Tree(s): OG_02_0001529_tree ,
OG_03_0000773 (SeedPlants) Phylogenetic Tree(s): OG_03_0000773_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G72200
Cluster	HCCA: Cluster_194

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00203540	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00008p00185200	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
AMTR_s00021p00161170	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00025p00229930	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00030p00032810	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00059p00176670	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
AMTR_s00102p00069840	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
AMTR_s00129p00065710	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00152p00054630	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
AT1G04360	No alias	RING/U-box superfamily protein	0.06	Archaeplastida
AT1G53010	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT2G42350	No alias	RING/U-box superfamily protein	0.05	Archaeplastida
AT3G60966	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
AT4G24015	No alias	RING/U-box superfamily protein	0.05	Archaeplastida
GSVIVT01000538001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01008754001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01009096001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
GSVIVT01012019001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.05	Archaeplastida
GSVIVT01012020001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01012022001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
GSVIVT01015682001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01020665001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.05	Archaeplastida
GSVIVT01022306001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01024698001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01026703001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01027769001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.05	Archaeplastida
GSVIVT01032684001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.06	Archaeplastida
GSVIVT01037142001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Gb_04644	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_04645	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_05004	No alias	Probable E3 ubiquitin-protein ligase RHA1A...	0.03	Archaeplastida
Gb_05386	No alias	RHA2 signal transducer of abscisic acid perception	0.03	Archaeplastida
Gb_08091	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_14778	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Gb_20700	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_33184	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_36232	No alias	IDF1 iron uptake IRT1-ubiquitin ligase	0.05	Archaeplastida
Gb_41046	No alias	Putative RING-H2 finger protein ATL12 OS=Arabidopsis...	0.04	Archaeplastida
Gb_41385	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os01g11460.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os01g11520.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os01g16120.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
LOC_Os01g60730.2	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.02	Archaeplastida
LOC_Os02g15110.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
LOC_Os02g33720.1	No alias	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os02g36330.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os02g45710.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os02g54830.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os03g05560.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
LOC_Os03g44636.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os03g57410.1	No alias	Putative RING-H2 finger protein ATL71 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os04g16970.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
LOC_Os04g49160.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os05g11860.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os05g15170.1	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
LOC_Os05g29710.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os05g36310.1	No alias	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os06g07100.2	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os06g11450.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
LOC_Os06g16060.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
LOC_Os07g48680.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os08g44950.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
LOC_Os09g37050.1	No alias	NEP1-interacting protein 1 OS=Arabidopsis thaliana...	0.06	Archaeplastida
LOC_Os10g42390.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_10021g0010	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
MA_10106144g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_101154g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_10426834g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_10427748g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_10431161g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_105610g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_114175g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_129306g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_13397g0010	No alias	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_152102g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_152783g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_167410g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_17249g0010	No alias	Putative RING-H2 finger protein ATL71 OS=Arabidopsis...	0.03	Archaeplastida
MA_201391g0010	No alias	Probable E3 ubiquitin-protein ligase RHA1A...	0.04	Archaeplastida
MA_222729g0010	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
MA_229590g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_25345g0010	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_26001g0020	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_280399g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_308999g0020	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_31462g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_373963g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_377006g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_391590g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_391931g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_43543g0010	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
MA_462422g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_51630g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_569551g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_61738g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_78643g0010	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
MA_80729g0030	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
MA_8338g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_96368g0010	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Mp5g08270.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Mp6g19130.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c14_22300V3.1	No alias	No annotation	0.02	Archaeplastida
Pp3c19_14050V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c20_12240V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Pp3c22_15440V3.1	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
Pp3c23_10580V3.1	No alias	RING/U-box superfamily protein	0.04	Archaeplastida
Pp3c23_1651V3.1	No alias	RING/U-box superfamily protein	0.03	Archaeplastida
Pp3c24_7770V3.1	No alias	hypoxia-responsive family protein / zinc finger...	0.04	Archaeplastida
Pp3c26_11650V3.1	No alias	TOXICOS EN LEVADURA 2	0.02	Archaeplastida
Pp3c4_30240V3.1	No alias	TOXICOS EN LEVADURA 2	0.03	Archaeplastida
Pp3c9_3390V3.1	No alias	RING/U-box superfamily protein	0.02	Archaeplastida
Smo137213	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
Smo412609	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Smo448587	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Solyc01g095810.3.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Solyc02g083660.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc02g087040.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc03g005490.4.1	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Solyc03g114090.1.1	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Solyc03g114190.1.1	No alias	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana...	0.06	Archaeplastida
Solyc03g123680.1.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc04g074820.3.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc05g008640.1.1	No alias	RHA2 signal transducer of abscisic acid perception	0.02	Archaeplastida
Solyc06g150136.1.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc10g008080.3.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc10g009487.1.1	No alias	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc10g081790.1.1	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
Solyc11g005320.1.1	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Solyc11g010330.3.1	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Solyc12g006230.3.1	No alias	ubiquitin protein ligase (XERICO)	0.03	Archaeplastida
Solyc12g094690.1.1	No alias	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e007103_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e007956_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e010029_P001	No alias	ubiquitin protein ligase (XERICO)	0.02	Archaeplastida
Zm00001e010787_P001	No alias	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Zm00001e011901_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e014286_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e014302_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e014709_P001	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Zm00001e015449_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e015477_P001	No alias	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Zm00001e015495_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e022742_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023238_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023515_P001	No alias	RING-H2-class E3 ligase	0.06	Archaeplastida
Zm00001e023585_P001	No alias	RING-H2-class E3 ligase	0.05	Archaeplastida
Zm00001e023723_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e026193_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
Zm00001e030136_P001	No alias	RING-H2-class E3 ligase	0.03	Archaeplastida
Zm00001e030930_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e031874_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e034421_P001	No alias	RING-H2-class E3 ligase	0.04	Archaeplastida
Zm00001e038107_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e039314_P001	No alias	RING-H2-class E3 ligase	0.02	Archaeplastida
AMTR_s00008p00185200	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.05	LandPlants
LOC_Os06g11450.1	No alias	RING-H2-class E3 ligase	0.02	LandPlants
MA_10429624g0010	No alias	RING-H2-class E3 ligase	0.03	LandPlants
MA_10431388g0020	No alias	no hits & (original description: none)	0.03	LandPlants
MA_10431388g0030	No alias	no hits & (original description: none)	0.02	LandPlants
MA_6248228g0010	No alias	no hits & (original description: none)	0.03	LandPlants
MA_7333826g0010	No alias	no hits & (original description: none)	0.04	LandPlants
Solyc03g112340.1.1	No alias	RING-H2-class E3 ligase	0.02	LandPlants
Solyc04g074820.3.1	No alias	RING-H2-class E3 ligase	0.03	LandPlants
Zm00001e034421_P001	No alias	RING-H2-class E3 ligase	0.03	LandPlants
AMTR_s00008p00185200	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	SeedPlants
LOC_Os06g11450.1	No alias	RING-H2-class E3 ligase	0.02	SeedPlants
MA_10429624g0010	No alias	RING-H2-class E3 ligase	0.02	SeedPlants
MA_6248228g0010	No alias	no hits & (original description: none)	0.02	SeedPlants
MA_7333826g0010	No alias	no hits & (original description: none)	0.02	SeedPlants
Solyc04g074820.3.1	No alias	RING-H2-class E3 ligase	0.02	SeedPlants
Zm00001e034421_P001	No alias	RING-H2-class E3 ligase	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006812	cation transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006826	iron ion transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009267	cellular response to starvation	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010106	cellular response to iron ion starvation	RCA	Interproscan
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transport	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042594	response to starvation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	143	186

External Links

No external refs found!

AT1G72200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation