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  5. Solyc04g078930.4.1

Solyc04g078930.4.1


Description : alpha amylase


Gene families : OG_01_0000584 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000584_tree ,
OG_02_0001382 (LandPlants) Phylogenetic Tree(s): OG_02_0001382_tree ,
OG_03_0002339 (SeedPlants) Phylogenetic Tree(s): OG_03_0002339_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g078930.4.1
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00183740 evm_27.TU.AmTr_v1... Carbohydrate metabolism.starch... 0.05 Archaeplastida
Gb_30448 No alias alpha amylase 0.02 Archaeplastida
LOC_Os06g49970.2 No alias alpha amylase 0.04 Archaeplastida
MA_217935g0010 No alias alpha amylase 0.06 Archaeplastida
MA_564355g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_9120657g0010 No alias Probable alpha-amylase 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp4g22350.1 No alias alpha amylase 0.02 Archaeplastida
Gb_30448 No alias alpha amylase 0.02 LandPlants
LOC_Os06g49970.2 No alias alpha amylase 0.04 LandPlants
MA_217935g0010 No alias alpha amylase 0.04 LandPlants
LOC_Os06g49970.2 No alias alpha amylase 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 346 404
IPR006047 Glyco_hydro_13_cat_dom 34 190
No external refs found!