Solyc04g077210.3.1


Description : transcription factor (KNOX)


Gene families : OG_01_0000263 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000263_tree ,
OG_02_0000128 (LandPlants) Phylogenetic Tree(s): OG_02_0000128_tree ,
OG_03_0000802 (SeedPlants) Phylogenetic Tree(s): OG_03_0000802_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g077210.3.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00162850 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.13 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.09 Archaeplastida
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.04 Archaeplastida
GSVIVT01004811001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
GSVIVT01013790001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
GSVIVT01019880001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01031241001 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
GSVIVT01035921001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
Gb_00573 No alias transcription factor (KNOX) 0.02 Archaeplastida
Gb_10887 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os03g03164.2 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.07 Archaeplastida
MA_9556g0010 No alias transcription factor (KNOX) 0.04 Archaeplastida
Pp3c5_26440V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e000173_P003 No alias transcription factor (KNOX) 0.04 Archaeplastida
Zm00001e005170_P001 No alias transcription factor (KNOX) 0.02 Archaeplastida
Zm00001e005547_P001 No alias transcription factor (KNOX) 0.09 Archaeplastida
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida
Zm00001e012294_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.09 Archaeplastida
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.05 Archaeplastida
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.06 Archaeplastida
Zm00001e039044_P001 No alias transcription factor (KNOX) 0.07 Archaeplastida
AMTR_s00026p00162850 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 LandPlants
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 LandPlants
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.02 LandPlants
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.1 LandPlants
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.09 LandPlants
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.04 LandPlants
GSVIVT01004811001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 LandPlants
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 LandPlants
GSVIVT01013790001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 LandPlants
GSVIVT01019880001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 LandPlants
GSVIVT01031241001 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 LandPlants
GSVIVT01035921001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 LandPlants
Gb_00573 No alias transcription factor (KNOX) 0.02 LandPlants
Gb_10887 No alias transcription factor (KNOX) 0.03 LandPlants
LOC_Os03g03164.2 No alias transcription factor (KNOX) 0.02 LandPlants
LOC_Os03g56110.1 No alias transcription factor (KNOX) 0.02 LandPlants
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.03 LandPlants
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.03 LandPlants
MA_3582g0010 No alias transcription factor (KNOX) 0.02 LandPlants
MA_8334369g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_9556g0010 No alias transcription factor (KNOX) 0.04 LandPlants
Pp3c5_26440V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 LandPlants
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 LandPlants
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.06 LandPlants
Zm00001e000173_P003 No alias transcription factor (KNOX) 0.04 LandPlants
Zm00001e005547_P001 No alias transcription factor (KNOX) 0.06 LandPlants
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.07 LandPlants
Zm00001e017489_P001 No alias transcription factor (KNOX) 0.07 LandPlants
Zm00001e027562_P001 No alias transcription factor (KNOX) 0.05 LandPlants
Zm00001e029453_P001 No alias transcription factor (KNOX) 0.05 LandPlants
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.03 LandPlants
Zm00001e039044_P001 No alias transcription factor (KNOX) 0.07 LandPlants
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.09 SeedPlants
GSVIVT01004811001 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 SeedPlants
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 SeedPlants
GSVIVT01030488001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 SeedPlants
Gb_00573 No alias transcription factor (KNOX) 0.02 SeedPlants
Gb_10887 No alias transcription factor (KNOX) 0.03 SeedPlants
Gb_14470 No alias transcription factor (KNOX) 0.02 SeedPlants
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.03 SeedPlants
MA_114226g0010 No alias no hits & (original description: none) 0.01 SeedPlants
MA_9556g0010 No alias transcription factor (KNOX) 0.04 SeedPlants
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.04 SeedPlants
Zm00001e005545_P001 No alias transcription factor (KNOX) 0.02 SeedPlants
Zm00001e011538_P001 No alias transcription factor (KNOX) 0.07 SeedPlants
Zm00001e032761_P001 No alias transcription factor (KNOX) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005540 KNOX1 93 135
IPR008422 Homeobox_KN_domain 276 315
IPR005541 KNOX2 147 192
IPR005539 ELK_dom 236 257
No external refs found!