Solyc04g072036.1.1


Description : plastidial mRNA chaperone (RLSB/BSF)


Gene families : OG_01_0005403 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005403_tree ,
OG_02_0004155 (LandPlants) Phylogenetic Tree(s): OG_02_0004155_tree ,
OG_03_0004968 (SeedPlants) Phylogenetic Tree(s): OG_03_0004968_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g072036.1.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00066980 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.08 Archaeplastida
AT1G71720 No alias Nucleic acid-binding proteins superfamily 0.05 Archaeplastida
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.09 Archaeplastida
Gb_23363 No alias plastidial mRNA chaperone (RLSB/BSF) 0.04 Archaeplastida
Gb_24764 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os01g40640.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.02 Archaeplastida
LOC_Os05g45920.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.08 Archaeplastida
MA_270960g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_48628g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_495832g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c14_19380V3.1 No alias Nucleic acid-binding proteins superfamily 0.02 Archaeplastida
Pp3c18_13010V3.1 No alias Nucleic acid-binding proteins superfamily 0.02 Archaeplastida
Zm00001e032251_P002 No alias plastidial mRNA chaperone (RLSB/BSF) 0.09 Archaeplastida
AMTR_s00131p00066980 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.07 LandPlants
AT1G71720 No alias Nucleic acid-binding proteins superfamily 0.03 LandPlants
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.09 LandPlants
Gb_23363 No alias plastidial mRNA chaperone (RLSB/BSF) 0.04 LandPlants
Gb_24764 No alias no hits & (original description: none) 0.01 LandPlants
LOC_Os01g40640.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.02 LandPlants
LOC_Os05g45920.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.07 LandPlants
MA_270960g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_336179g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_48628g0010 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e032251_P002 No alias plastidial mRNA chaperone (RLSB/BSF) 0.09 LandPlants
AMTR_s00131p00066980 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.07 SeedPlants
AT1G71720 No alias Nucleic acid-binding proteins superfamily 0.02 SeedPlants
GSVIVT01013706001 No alias 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.08 SeedPlants
Gb_23363 No alias plastidial mRNA chaperone (RLSB/BSF) 0.03 SeedPlants
Gb_24764 No alias no hits & (original description: none) 0.01 SeedPlants
LOC_Os01g40640.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.02 SeedPlants
LOC_Os05g45920.1 No alias plastidial mRNA chaperone (RLSB/BSF) 0.05 SeedPlants
MA_48628g0010 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e032251_P002 No alias plastidial mRNA chaperone (RLSB/BSF) 0.09 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003029 S1_domain 369 429
IPR003029 S1_domain 293 358
No external refs found!