Solyc04g057940.4.1


Description : ubiquitin E3 ligase (CERBERUS/LIN)


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0003337 (SeedPlants) Phylogenetic Tree(s): OG_03_0003337_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g057940.4.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00231470 evm_27.TU.AmTr_v1... Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus 0.02 Archaeplastida
AMTR_s00109p00103350 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.04 Archaeplastida
Mp3g09570.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.02 Archaeplastida
AMTR_s00109p00103350 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.04 LandPlants
AMTR_s00109p00103350 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.04 SeedPlants
LOC_Os01g12930.1 No alias ubiquitin E3 ligase (CERBERUS/LIN) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 504 574
IPR001680 WD40_repeat 1451 1479
IPR001680 WD40_repeat 1235 1269
No external refs found!