Solyc04g015950.3.1


Description : Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana (sp|q8rws8|pp199_arath : 738.0)


Gene families : OG_01_0007624 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007624_tree ,
OG_02_0006946 (LandPlants) Phylogenetic Tree(s): OG_02_0006946_tree ,
OG_03_0006926 (SeedPlants) Phylogenetic Tree(s): OG_03_0006926_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g015950.3.1
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00159p00058480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g41720... 0.03 Archaeplastida
AT2G41720 EMB2654 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
Gb_07283 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.05 Archaeplastida
LOC_Os07g11280.2 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.07 Archaeplastida
MA_10429061g0010 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.08 Archaeplastida
Pp3c2_1940V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.13 Archaeplastida
Zm00001e035316_P001 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.03 Archaeplastida
AMTR_s00159p00058480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g41720... 0.03 LandPlants
AT2G41720 EMB2654 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 LandPlants
Gb_07283 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.05 LandPlants
LOC_Os07g11280.2 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.07 LandPlants
MA_10429061g0010 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.06 LandPlants
Pp3c2_1940V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.11 LandPlants
Zm00001e035316_P001 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.03 LandPlants
AMTR_s00159p00058480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g41720... 0.02 SeedPlants
AT2G41720 EMB2654 Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 SeedPlants
Gb_07283 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.05 SeedPlants
LOC_Os07g11280.2 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.05 SeedPlants
MA_10429061g0010 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.04 SeedPlants
Zm00001e035316_P001 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 80 128
IPR002885 Pentatricopeptide_repeat 360 407
IPR002885 Pentatricopeptide_repeat 256 304
IPR002885 Pentatricopeptide_repeat 330 358
IPR002885 Pentatricopeptide_repeat 1 55
IPR002885 Pentatricopeptide_repeat 209 231
IPR002885 Pentatricopeptide_repeat 493 544
IPR002885 Pentatricopeptide_repeat 138 200
No external refs found!