Solyc04g015440.4.1


Description : Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana (sp|q9sz52|pp344_arath : 1216.0)


Gene families : OG_01_0008852 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008852_tree ,
OG_02_0008546 (LandPlants) Phylogenetic Tree(s): OG_02_0008546_tree ,
OG_03_0005697 (SeedPlants) Phylogenetic Tree(s): OG_03_0005697_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g015440.4.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT4G31850 PGR3 proton gradient regulation 3 0.13 Archaeplastida
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.15 Archaeplastida
Gb_22724 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Gb_33624 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
LOC_Os10g28600.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 Archaeplastida
AMTR_s00019p00039970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g31850,... 0.03 LandPlants
AT4G31850 PGR3 proton gradient regulation 3 0.14 LandPlants
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.12 LandPlants
Gb_22724 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.04 LandPlants
Gb_33624 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 LandPlants
LOC_Os10g28600.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 LandPlants
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 LandPlants
AMTR_s00019p00039970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g31850,... 0.03 SeedPlants
AT4G31850 PGR3 proton gradient regulation 3 0.12 SeedPlants
GSVIVT01035975001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.12 SeedPlants
Gb_22724 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.05 SeedPlants
Gb_33624 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 SeedPlants
LOC_Os10g28600.1 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 SeedPlants
Zm00001e038060_P001 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 267 324
IPR002885 Pentatricopeptide_repeat 199 259
IPR002885 Pentatricopeptide_repeat 882 911
IPR002885 Pentatricopeptide_repeat 531 557
IPR002885 Pentatricopeptide_repeat 352 381
IPR002885 Pentatricopeptide_repeat 628 660
IPR002885 Pentatricopeptide_repeat 385 431
IPR002885 Pentatricopeptide_repeat 1053 1093
IPR002885 Pentatricopeptide_repeat 491 528
IPR002885 Pentatricopeptide_repeat 561 610
IPR002885 Pentatricopeptide_repeat 808 857
IPR002885 Pentatricopeptide_repeat 983 1027
IPR002885 Pentatricopeptide_repeat 913 962
No external refs found!