Solyc04g014870.3.1


Description : ssRNA polymerase (RDR6)


Gene families : OG_01_0000823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000823_tree ,
OG_02_0003329 (LandPlants) Phylogenetic Tree(s): OG_02_0003329_tree ,
OG_03_0002749 (SeedPlants) Phylogenetic Tree(s): OG_03_0002749_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g014870.3.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00056260 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.03 Archaeplastida
AT1G14790 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 0.03 Archaeplastida
AT4G11130 SMD1, RDR2 RNA-dependent RNA polymerase 2 0.07 Archaeplastida
GSVIVT01035851001 No alias RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.03 Archaeplastida
Gb_17277 No alias Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa... 0.02 Archaeplastida
Gb_17278 No alias RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
AMTR_s00078p00056260 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.03 LandPlants
AMTR_s00078p00056260 evm_27.TU.AmTr_v1... RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 418 1000
No external refs found!