Solyc04g008410.3.1


Description : Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana (sp|q9sa60|ppr6_arath : 927.0)


Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0001470 (LandPlants) Phylogenetic Tree(s): OG_02_0001470_tree ,
OG_03_0003417 (SeedPlants) Phylogenetic Tree(s): OG_03_0003417_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008410.3.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.04 Archaeplastida
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.05 Archaeplastida
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.03 Archaeplastida
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 LandPlants
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 LandPlants
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.05 LandPlants
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.03 LandPlants
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 LandPlants
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 SeedPlants
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 SeedPlants
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 SeedPlants
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.01 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 623 668
IPR002885 Pentatricopeptide_repeat 536 581
IPR002885 Pentatricopeptide_repeat 486 511
IPR002885 Pentatricopeptide_repeat 325 351
No external refs found!