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  5. Solyc04g007600.4.1

Solyc04g007600.4.1


Description : RING-v-class E3 ligase


Gene families : OG_01_0000436 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000436_tree ,
OG_02_0000506 (LandPlants) Phylogenetic Tree(s): OG_02_0000506_tree ,
OG_03_0008056 (SeedPlants) Phylogenetic Tree(s): OG_03_0008056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g007600.4.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AT4G02075 PIT1 RING/FYVE/PHD zinc finger superfamily protein 0.03 Archaeplastida
AT5G38070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 Archaeplastida
GSVIVT01028110001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01032601001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_37740 No alias RING-v-class E3 ligase 0.02 Archaeplastida
LOC_Os01g49280.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
LOC_Os05g28730.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
MA_202212g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc06g069780.4.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Zm00001e021220_P001 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Zm00001e026209_P003 No alias RING-v-class E3 ligase 0.01 Archaeplastida
Zm00001e028572_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
AT5G38070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 LandPlants
GSVIVT01030910001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 LandPlants
MA_202212g0010 No alias no hits & (original description: none) 0.01 LandPlants
Zm00001e021220_P001 No alias RING-v-class E3 ligase 0.02 LandPlants
Zm00001e028572_P001 No alias no hits & (original description: none) 0.03 LandPlants
AT2G01275 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR022143 DUF3675 110 224
IPR011016 Znf_RING-CH 59 104
No external refs found!