Solyc04g005320.3.1


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0000791 (SeedPlants) Phylogenetic Tree(s): OG_03_0000791_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g005320.3.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00217560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00013p00103080 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
AMTR_s00071p00193200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.07 Archaeplastida
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.04 Archaeplastida
AT2G34440 AGL29 AGAMOUS-like 29 0.03 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.07 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.05 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.08 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.04 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.09 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G62165 AGL42 AGAMOUS-like 42 0.04 Archaeplastida
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01027577001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
Gb_03807 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_05128 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_15398 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.03 Archaeplastida
Gb_30604 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_38920 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Gb_41550 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os01g10504.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os03g03100.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_10256834g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.05 Archaeplastida
MA_126898g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_20180g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_35712g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_5917g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.05 Archaeplastida
MA_63212g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_6544g0010 No alias Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.03 Archaeplastida
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_9382435g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c16_19170V3.1 No alias AGAMOUS-like 61 0.02 Archaeplastida
Pp3c17_24040V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Pp3c9_1370V3.1 No alias AGAMOUS-like 66 0.03 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Smo5960 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Smo79393 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.07 Archaeplastida
Solyc04g076280.4.1 No alias MADS-box protein SVP OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e018811_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 LandPlants
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 LandPlants
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 LandPlants
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.03 LandPlants
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.04 LandPlants
AT2G34440 AGL29 AGAMOUS-like 29 0.03 LandPlants
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.06 LandPlants
AT2G45650 AGL6 AGAMOUS-like 6 0.02 LandPlants
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 LandPlants
AT4G11880 AGL14 AGAMOUS-like 14 0.03 LandPlants
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.03 LandPlants
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.06 LandPlants
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.02 LandPlants
AT5G62165 AGL42 AGAMOUS-like 42 0.04 LandPlants
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01006592001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 LandPlants
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 LandPlants
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.06 LandPlants
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 LandPlants
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
GSVIVT01027577001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
Gb_03068 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Gb_16301 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.03 LandPlants
Gb_30604 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Gb_38922 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Gb_41550 No alias transcription factor (MADS/AGL) 0.04 LandPlants
LOC_Os01g10504.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os03g03100.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os04g49150.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os06g06750.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os07g01820.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_10256834g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_10289256g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 LandPlants
MA_126898g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.04 LandPlants
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_19007g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_20180g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_276701g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_35712g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_6279308g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 LandPlants
MA_63212g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_758606g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 LandPlants
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.04 LandPlants
MA_9382435g0010 No alias no hits & (original description: none) 0.05 LandPlants
Smo235487 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
Smo5960 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
Smo79393 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.06 LandPlants
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc06g069430.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.04 LandPlants
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.04 LandPlants
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.05 LandPlants
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.04 LandPlants
Zm00001e026007_P004 No alias no hits & (original description: none) 0.04 LandPlants
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.05 LandPlants
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.02 SeedPlants
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 SeedPlants
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.05 SeedPlants
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 SeedPlants
GSVIVT01012249001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 SeedPlants
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 SeedPlants
GSVIVT01036551001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 SeedPlants
LOC_Os04g49150.1 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
LOC_Os08g41950.1 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
Solyc03g114840.3.1 No alias transcription factor (MADS/AGL) 0.04 SeedPlants
Solyc05g012020.4.1 No alias transcription factor (MADS/AGL) 0.04 SeedPlants
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.03 SeedPlants
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 83 171
No external refs found!