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  5. Solyc03g120900.3.1

Solyc03g120900.3.1


Description : scaffolding component Sec13 of coat protein complex


Gene families : OG_01_0002497 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002497_tree ,
OG_02_0002542 (LandPlants) Phylogenetic Tree(s): OG_02_0002542_tree ,
OG_03_0004509 (SeedPlants) Phylogenetic Tree(s): OG_03_0004509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g120900.3.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00099400 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 Archaeplastida
Pp3c19_12500V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 Archaeplastida
AMTR_s00101p00099400 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 LandPlants
LOC_Os07g14280.1 No alias scaffolding component Sec13 of coat protein complex 0.02 LandPlants
Pp3c19_12500V3.1 No alias transducin family protein / WD-40 repeat family protein 0.02 LandPlants
AMTR_s00101p00099400 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 SeedPlants
LOC_Os02g04320.1 No alias scaffolding component Sec13 of coat protein complex 0.01 SeedPlants
Zm00001e016458_P001 No alias scaffolding component Sec13 of coat protein complex 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 8 37
IPR001680 WD40_repeat 206 240
IPR024977 Apc4_WD40_dom 71 158
No external refs found!