AT1G69290


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0001470 (LandPlants) Phylogenetic Tree(s): OG_02_0001470_tree ,
OG_03_0007371 (SeedPlants) Phylogenetic Tree(s): OG_03_0007371_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G69290
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00179800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g17616... 0.03 Archaeplastida
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 Archaeplastida
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 Archaeplastida
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.05 Archaeplastida
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.06 Archaeplastida
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.05 Archaeplastida
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.05 Archaeplastida
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 Archaeplastida
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.05 Archaeplastida
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.08 Archaeplastida
AMTR_s00002p00179800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g17616... 0.03 LandPlants
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 LandPlants
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.04 LandPlants
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.06 LandPlants
LOC_Os07g31310.1 No alias Pentatricopeptide repeat-containing protein At4g17616... 0.05 LandPlants
LOC_Os10g28665.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.05 LandPlants
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 LandPlants
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 LandPlants
Solyc04g008410.3.1 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.05 LandPlants
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 LandPlants
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.05 SeedPlants
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.02 SeedPlants
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.05 SeedPlants
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 288 309
IPR002885 Pentatricopeptide_repeat 368 392
IPR002885 Pentatricopeptide_repeat 420 464
IPR002885 Pentatricopeptide_repeat 503 550
No external refs found!