Solyc03g118290.3.1


Description : transcription factor (ARF)


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000395 (LandPlants) Phylogenetic Tree(s): OG_02_0000395_tree ,
OG_03_0002311 (SeedPlants) Phylogenetic Tree(s): OG_03_0002311_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g118290.3.1
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
AT2G28350 ARF10 auxin response factor 10 0.04 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os02g06910.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.02 Archaeplastida
Pp3c14_16990V3.1 No alias auxin response factor 6 0.04 Archaeplastida
Pp3c6_26890V3.1 No alias auxin response factor 16 0.03 Archaeplastida
Zm00001e003229_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e006577_P003 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e018126_P002 No alias transcription factor (ARF) 0.02 Archaeplastida
GSVIVT01011008001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 LandPlants
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.03 LandPlants
Pp3c5_9420V3.1 No alias auxin response factor 2 0.02 LandPlants
AT5G62000 HSS, ARF1-BP, ARF2, ORE14 auxin response factor 2 0.02 SeedPlants
MA_10432580g0010 No alias transcription factor (ARF) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 712 805
IPR010525 Auxin_resp 272 354
IPR003340 B3_DNA-bd 146 247
No external refs found!