AT1G69180 (CRC)

Aliases : CRC

Description : Plant-specific transcription factor YABBY family protein

Gene families : OG_01_0000890 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000890_tree ,
OG_02_0010937 (LandPlants) Phylogenetic Tree(s): OG_02_0010937_tree ,
OG_03_0010891 (SeedPlants) Phylogenetic Tree(s): OG_03_0010891_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G69180
Cluster	HCCA: Cluster_69

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00047p00199030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AMTR_s00078p00029420	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01012246001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01037533001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
LOC_Os07g06620.2	No alias	transcription factor (YABBY)	0.03	Archaeplastida
LOC_Os10g36420.1	No alias	transcription factor (YABBY)	0.02	Archaeplastida
LOC_Os12g42610.1	No alias	transcription factor (YABBY)	0.05	Archaeplastida
MA_407206g0010	No alias	transcription factor (YABBY)	0.02	Archaeplastida
Solyc05g005240.2.1	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Solyc06g073920.3.1	No alias	transcription factor (YABBY)	0.05	Archaeplastida
Solyc11g071810.2.1	No alias	transcription factor (YABBY)	0.02	Archaeplastida
Zm00001e000845_P005	No alias	transcription factor (YABBY)	0.02	Archaeplastida
Zm00001e003268_P003	No alias	transcription factor (YABBY)	0.04	Archaeplastida
Zm00001e012387_P001	No alias	transcription factor (YABBY)	0.03	Archaeplastida
Zm00001e012388_P001	No alias	transcription factor (YABBY)	0.02	Archaeplastida
Zm00001e017951_P002	No alias	transcription factor (YABBY)	0.03	Archaeplastida
Zm00001e032845_P002	No alias	transcription factor (YABBY)	0.02	Archaeplastida
Zm00001e038717_P002	No alias	transcription factor (YABBY)	0.02	Archaeplastida
AMTR_s00047p00199030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	LandPlants
GSVIVT01012246001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	LandPlants
Solyc01g010240.3.1	No alias	transcription factor (YABBY)	0.02	LandPlants
Zm00001e000845_P005	No alias	transcription factor (YABBY)	0.02	LandPlants
Zm00001e038717_P002	No alias	transcription factor (YABBY)	0.03	LandPlants
Zm00001e000845_P005	No alias	transcription factor (YABBY)	0.02	SeedPlants
Zm00001e038717_P002	No alias	transcription factor (YABBY)	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006333	chromatin assembly or disassembly	RCA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009860	pollen tube growth	RCA	Interproscan
BP	GO:0009886	post-embryonic animal morphogenesis	RCA	Interproscan
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009944	polarity specification of adaxial/abaxial axis	TAS	Interproscan
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010022	meristem determinacy	None	Extended
BP	GO:0010093	specification of floral organ identity	RCA	Interproscan
BP	GO:0010254	nectary development	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010582	floral meristem determinacy	IGI	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031537	regulation of anthocyanin metabolic process	None	Extended
BP	GO:0031540	regulation of anthocyanin biosynthetic process	RCA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	IMP	Interproscan
BP	GO:0048440	carpel development	RCA	Interproscan
BP	GO:0048441	petal development	RCA	Interproscan
BP	GO:0048443	stamen development	RCA	Interproscan
BP	GO:0048479	style development	IMP	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048507	meristem development	RCA	Interproscan
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065001	specification of axis polarity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090701	specification of plant organ identity	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006780	YABBY	18	156

External Links

No external refs found!

AT1G69180 (CRC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation