Solyc03g116560.1.1


Description : Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana (sp|q9ssr4|ppr77_arath : 776.0)


Gene families : OG_01_0010975 (Archaeplastida) Phylogenetic Tree(s): OG_01_0010975_tree ,
OG_02_0010924 (LandPlants) Phylogenetic Tree(s): OG_02_0010924_tree ,
OG_03_0010866 (SeedPlants) Phylogenetic Tree(s): OG_03_0010866_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g116560.1.1
Cluster HCCA: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00122950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52620... 0.07 Archaeplastida
AT1G52620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
GSVIVT01017297001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.14 Archaeplastida
Gb_26665 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.04 Archaeplastida
LOC_Os11g04295.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 Archaeplastida
MA_957303g0010 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.02 Archaeplastida
Zm00001e024077_P001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.05 Archaeplastida
AMTR_s00104p00122950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52620... 0.07 LandPlants
AT1G52620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 LandPlants
GSVIVT01017297001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.13 LandPlants
Gb_26665 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 LandPlants
LOC_Os11g04295.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 LandPlants
Zm00001e024077_P001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 LandPlants
AMTR_s00024p00216810 evm_27.TU.AmTr_v1... No description available 0.01 SeedPlants
AMTR_s00104p00122950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52620... 0.05 SeedPlants
AT1G52620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
GSVIVT01017297001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.11 SeedPlants
Gb_26665 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.02 SeedPlants
LOC_Os11g04295.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.02 SeedPlants
Zm00001e024077_P001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 713 758
IPR002885 Pentatricopeptide_repeat 349 398
IPR002885 Pentatricopeptide_repeat 454 502
IPR002885 Pentatricopeptide_repeat 244 293
IPR002885 Pentatricopeptide_repeat 524 573
IPR002885 Pentatricopeptide_repeat 594 643
IPR002885 Pentatricopeptide_repeat 422 452
IPR002885 Pentatricopeptide_repeat 172 200
IPR002885 Pentatricopeptide_repeat 318 346
No external refs found!