Solyc03g113630.3.1


Description : PAP2/TAC2 cofactor of plastid-encoded RNA polymerase


Gene families : OG_01_0008584 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008584_tree ,
OG_02_0007907 (LandPlants) Phylogenetic Tree(s): OG_02_0007907_tree ,
OG_03_0010613 (SeedPlants) Phylogenetic Tree(s): OG_03_0010613_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g113630.3.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AT1G74850 PTAC2 plastid transcriptionally active 2 0.08 Archaeplastida
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 Archaeplastida
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.03 Archaeplastida
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.04 Archaeplastida
Pp3c11_11830V3.1 No alias plastid transcriptionally active 2 0.02 Archaeplastida
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida
AT1G74850 PTAC2 plastid transcriptionally active 2 0.07 LandPlants
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 LandPlants
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 LandPlants
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.04 LandPlants
Pp3c11_11830V3.1 No alias plastid transcriptionally active 2 0.02 LandPlants
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 LandPlants
AT1G74850 PTAC2 plastid transcriptionally active 2 0.07 SeedPlants
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 SeedPlants
LOC_Os03g60910.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.02 SeedPlants
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.02 SeedPlants
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.08 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 438 498
IPR002885 Pentatricopeptide_repeat 229 289
IPR002885 Pentatricopeptide_repeat 666 694
IPR002885 Pentatricopeptide_repeat 132 163
IPR002885 Pentatricopeptide_repeat 310 356
IPR002885 Pentatricopeptide_repeat 384 428
IPR002885 Pentatricopeptide_repeat 170 218
IPR002885 Pentatricopeptide_repeat 524 568
No external refs found!