AT1G67090 (RBCS1A)


Aliases : RBCS1A

Description : ribulose bisphosphate carboxylase small chain 1A


Gene families : OG_01_0000561 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000561_tree ,
OG_02_0000421 (LandPlants) Phylogenetic Tree(s): OG_02_0000421_tree ,
OG_03_0001423 (SeedPlants) Phylogenetic Tree(s): OG_03_0001423_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G67090
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.21 Archaeplastida
Cre02.g120100 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.06 Archaeplastida
Cre02.g120150 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 Archaeplastida
GSVIVT01008288001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.14 Archaeplastida
Gb_00380 No alias small subunit of ribulose-1,5-bisphosphat... 0.21 Archaeplastida
LOC_Os12g17600.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.18 Archaeplastida
LOC_Os12g19381.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.18 Archaeplastida
LOC_Os12g19470.2 No alias small subunit of ribulose-1,5-bisphosphat... 0.12 Archaeplastida
MA_47626g0010 No alias small subunit of ribulose-1,5-bisphosphat... 0.15 Archaeplastida
Mp4g06020.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.05 Archaeplastida
Mp4g06030.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.02 Archaeplastida
Mp4g06050.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 Archaeplastida
Mp4g10850.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.08 Archaeplastida
Mp4g15070.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.04 Archaeplastida
Pp3c13_15786V3.1 No alias No annotation 0.1 Archaeplastida
Pp3c13_15800V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.2 Archaeplastida
Pp3c13_15910V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.02 Archaeplastida
Pp3c13_15980V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.11 Archaeplastida
Pp3c13_16000V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.17 Archaeplastida
Pp3c13_16130V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.05 Archaeplastida
Pp3c15_22720V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.02 Archaeplastida
Pp3c19_1840V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.06 Archaeplastida
Pp3c22_540V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.01 Archaeplastida
Pp3c2_4100V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.03 Archaeplastida
Pp3c3_14510V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.19 Archaeplastida
Pp3c3_18750V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.14 Archaeplastida
Pp3c3_20110V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.04 Archaeplastida
Pp3c3_20140V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.11 Archaeplastida
Smo147927 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.1 Archaeplastida
Solyc02g063150.3.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.23 Archaeplastida
Solyc02g085950.4.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.18 Archaeplastida
Solyc03g034220.3.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.18 Archaeplastida
Zm00001e009125_P001 No alias no hits & (original description: none) 0.2 Archaeplastida
Zm00001e024168_P001 No alias no hits & (original description: none) 0.19 Archaeplastida
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.18 LandPlants
GSVIVT01008288001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.12 LandPlants
Gb_00380 No alias small subunit of ribulose-1,5-bisphosphat... 0.2 LandPlants
LOC_Os12g17600.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.17 LandPlants
LOC_Os12g19381.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.17 LandPlants
LOC_Os12g19470.2 No alias small subunit of ribulose-1,5-bisphosphat... 0.11 LandPlants
MA_47626g0010 No alias small subunit of ribulose-1,5-bisphosphat... 0.14 LandPlants
Mp4g06020.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 LandPlants
Mp4g06050.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 LandPlants
Mp4g10850.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.07 LandPlants
Mp4g15070.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.04 LandPlants
Pp3c12_11880V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.01 LandPlants
Pp3c13_15786V3.1 No alias No annotation 0.11 LandPlants
Pp3c13_15800V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.18 LandPlants
Pp3c13_15910V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.01 LandPlants
Pp3c13_15980V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.11 LandPlants
Pp3c13_16000V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.15 LandPlants
Pp3c13_16130V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.05 LandPlants
Pp3c19_1840V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.05 LandPlants
Pp3c22_540V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.01 LandPlants
Pp3c2_4100V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.02 LandPlants
Pp3c3_14510V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.17 LandPlants
Pp3c3_18750V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.13 LandPlants
Pp3c3_20110V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.04 LandPlants
Pp3c3_20140V3.1 No alias ribulose bisphosphate carboxylase small chain 1A 0.1 LandPlants
Pp3c4_13260V3.1 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.01 LandPlants
Smo147927 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.1 LandPlants
Solyc02g063150.3.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.2 LandPlants
Solyc02g085950.4.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.18 LandPlants
Solyc03g034220.3.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.16 LandPlants
Zm00001e009125_P001 No alias no hits & (original description: none) 0.2 LandPlants
Zm00001e024168_P001 No alias no hits & (original description: none) 0.17 LandPlants
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.19 SeedPlants
GSVIVT01008288001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.11 SeedPlants
Gb_00380 No alias small subunit of ribulose-1,5-bisphosphat... 0.2 SeedPlants
LOC_Os12g17600.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.17 SeedPlants
LOC_Os12g19381.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.16 SeedPlants
LOC_Os12g19470.2 No alias small subunit of ribulose-1,5-bisphosphat... 0.11 SeedPlants
MA_47626g0010 No alias small subunit of ribulose-1,5-bisphosphat... 0.14 SeedPlants
Solyc02g063150.3.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.21 SeedPlants
Solyc02g085950.4.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.18 SeedPlants
Solyc03g034220.3.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.16 SeedPlants
Zm00001e009125_P001 No alias no hits & (original description: none) 0.19 SeedPlants
Zm00001e024168_P001 No alias no hits & (original description: none) 0.17 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IDA Interproscan
BP GO:0009409 response to cold IEP Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009535 chloroplast thylakoid membrane IDA Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009573 chloroplast ribulose bisphosphate carboxylase complex ISS Interproscan
CC GO:0009579 thylakoid IDA Interproscan
BP GO:0009637 response to blue light IEP Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0010114 response to red light IEP Interproscan
BP GO:0010218 response to far red light IEP Interproscan
BP GO:0015977 carbon fixation ISS Interproscan
BP GO:0015979 photosynthesis IMP Interproscan
CC GO:0016020 membrane IDA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
CC GO:0031977 thylakoid lumen IDA Interproscan
CC GO:0048046 apoplast IDA Interproscan
BP GO:0080158 obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis IMP Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000894 RuBisCO_sc_dom 67 175
IPR024680 RuBisCO_ssu_N 2 42
No external refs found!